Fast and sensitive mapping of nanopore sequencing reads with GraphMap

Read mapping and alignment tools are critical for many applications based on MinION sequencers. Here, the authors present GraphMap, a mapping algorithm designed to analyze nanopore sequencing reads, that progressively refines candidate alignments to handle potentially high error rates to align long...

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Autores principales:	Ivan Sović, Mile Šikić, Andreas Wilm, Shannon Nicole Fenlon, Swaine Chen, Niranjan Nagarajan
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2016
Materias:	Science Q
Acceso en línea:	https://doaj.org/article/cfc78462d2034e4d9316199b10ebf6ef
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spelling	oai:doaj.org-article:cfc78462d2034e4d9316199b10ebf6ef2021-12-02T15:35:22ZFast and sensitive mapping of nanopore sequencing reads with GraphMap10.1038/ncomms113072041-1723https://doaj.org/article/cfc78462d2034e4d9316199b10ebf6ef2016-04-01T00:00:00Zhttps://doi.org/10.1038/ncomms11307https://doaj.org/toc/2041-1723Read mapping and alignment tools are critical for many applications based on MinION sequencers. Here, the authors present GraphMap, a mapping algorithm designed to analyze nanopore sequencing reads, that progressively refines candidate alignments to handle potentially high error rates to align long reads.Ivan SovićMile ŠikićAndreas WilmShannon Nicole FenlonSwaine ChenNiranjan NagarajanNature PortfolioarticleScienceQENNature Communications, Vol 7, Iss 1, Pp 1-11 (2016)
institution	DOAJ
collection	DOAJ
language	EN
topic	Science Q
spellingShingle	Science Q Ivan Sović Mile Šikić Andreas Wilm Shannon Nicole Fenlon Swaine Chen Niranjan Nagarajan Fast and sensitive mapping of nanopore sequencing reads with GraphMap
description	Read mapping and alignment tools are critical for many applications based on MinION sequencers. Here, the authors present GraphMap, a mapping algorithm designed to analyze nanopore sequencing reads, that progressively refines candidate alignments to handle potentially high error rates to align long reads.
format	article
author	Ivan Sović Mile Šikić Andreas Wilm Shannon Nicole Fenlon Swaine Chen Niranjan Nagarajan
author_facet	Ivan Sović Mile Šikić Andreas Wilm Shannon Nicole Fenlon Swaine Chen Niranjan Nagarajan
author_sort	Ivan Sović
title	Fast and sensitive mapping of nanopore sequencing reads with GraphMap
title_short	Fast and sensitive mapping of nanopore sequencing reads with GraphMap
title_full	Fast and sensitive mapping of nanopore sequencing reads with GraphMap
title_fullStr	Fast and sensitive mapping of nanopore sequencing reads with GraphMap
title_full_unstemmed	Fast and sensitive mapping of nanopore sequencing reads with GraphMap
title_sort	fast and sensitive mapping of nanopore sequencing reads with graphmap
publisher	Nature Portfolio
publishDate	2016
url	https://doaj.org/article/cfc78462d2034e4d9316199b10ebf6ef
work_keys_str_mv	AT ivansovic fastandsensitivemappingofnanoporesequencingreadswithgraphmap AT milesikic fastandsensitivemappingofnanoporesequencingreadswithgraphmap AT andreaswilm fastandsensitivemappingofnanoporesequencingreadswithgraphmap AT shannonnicolefenlon fastandsensitivemappingofnanoporesequencingreadswithgraphmap AT swainechen fastandsensitivemappingofnanoporesequencingreadswithgraphmap AT niranjannagarajan fastandsensitivemappingofnanoporesequencingreadswithgraphmap
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Fast and sensitive mapping of nanopore sequencing reads with GraphMap

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