Correlation among Snpb11 markers, root growth, and physiological characters of upland rice under aluminum stress

Abstract. Fendiyanto MH, Satrio RD, Suharsono, Tjahjoleksono A, Miftahudin. 2019. Correlation among Snpb11 markers, root growth, and physiological characters of upland rice under aluminum stress. Biodiversitas 20: 1243-1254. The cultivation of upland rice in acid soils faces aluminum (Al) toxicity....

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Autores principales:	MIFTAHUL HUDA FENDIYANTO, RIZKY DWI SATRIO, SUHARSONO SUHARSONO, ARIS TJAHJOLEKSONO, M MIFTAHUDIN
Formato:	article
Lenguaje:	EN
Publicado:	MBI & UNS Solo 2019
Materias:	aluminum, inpago, malondialdehyde, rice, snp. Biology (General) QH301-705.5
Acceso en línea:	https://doaj.org/article/d2682fe8e29b4f67817e66d284dbe12c
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spelling	oai:doaj.org-article:d2682fe8e29b4f67817e66d284dbe12c2021-11-21T21:40:43ZCorrelation among Snpb11 markers, root growth, and physiological characters of upland rice under aluminum stress1412-033X2085-472210.13057/biodiv/d200514https://doaj.org/article/d2682fe8e29b4f67817e66d284dbe12c2019-04-01T00:00:00Zhttps://smujo.id/biodiv/article/view/3824https://doaj.org/toc/1412-033Xhttps://doaj.org/toc/2085-4722Abstract. Fendiyanto MH, Satrio RD, Suharsono, Tjahjoleksono A, Miftahudin. 2019. Correlation among Snpb11 markers, root growth, and physiological characters of upland rice under aluminum stress. Biodiversitas 20: 1243-1254. The cultivation of upland rice in acid soils faces aluminum (Al) toxicity. Development of Al-tolerant rice could be one of the solutions to overcome the problem. Marker-assisted breeding to develop Al-tolerant rice requires at least a molecular marker for foreground selection. Snpb11 is a molecular marker developed from the nucleotide differences in a specific allele between Al-tolerant and sensitive rice. Snpb11 has never been used as a molecular marker in rice. Therefore this study aimed to examine the correlation among Snpb11 marker, root growth, and physiological characters under Al stress in upland rice. We used physiological characters and the Snpb11 marker to justify the Al tolerance level in several upland rice varieties. We found that physiological characters, i.e.: primary root length, total root length, chlorophyll, and carotenoid content showed positive correlation to Snpb11. Conversely, root malondialdehyde content, which represents the level of lipid peroxidation showed a negative correlation to Snpb11. There is evidence that the Snpb11 highly correlated with primary and total root length characters, which are the Al tolerance parameters used in rice. Therefore, Snpb11 markers can be used to distinguish the Al tolerance level in upland rice.MIFTAHUL HUDA FENDIYANTORIZKY DWI SATRIOSUHARSONO SUHARSONOARIS TJAHJOLEKSONOM MIFTAHUDINMBI & UNS Soloarticlealuminum, inpago, malondialdehyde, rice, snp.Biology (General)QH301-705.5ENBiodiversitas, Vol 20, Iss 5 (2019)
institution	DOAJ
collection	DOAJ
language	EN
topic	aluminum, inpago, malondialdehyde, rice, snp. Biology (General) QH301-705.5
spellingShingle	aluminum, inpago, malondialdehyde, rice, snp. Biology (General) QH301-705.5 MIFTAHUL HUDA FENDIYANTO RIZKY DWI SATRIO SUHARSONO SUHARSONO ARIS TJAHJOLEKSONO M MIFTAHUDIN Correlation among Snpb11 markers, root growth, and physiological characters of upland rice under aluminum stress
description	Abstract. Fendiyanto MH, Satrio RD, Suharsono, Tjahjoleksono A, Miftahudin. 2019. Correlation among Snpb11 markers, root growth, and physiological characters of upland rice under aluminum stress. Biodiversitas 20: 1243-1254. The cultivation of upland rice in acid soils faces aluminum (Al) toxicity. Development of Al-tolerant rice could be one of the solutions to overcome the problem. Marker-assisted breeding to develop Al-tolerant rice requires at least a molecular marker for foreground selection. Snpb11 is a molecular marker developed from the nucleotide differences in a specific allele between Al-tolerant and sensitive rice. Snpb11 has never been used as a molecular marker in rice. Therefore this study aimed to examine the correlation among Snpb11 marker, root growth, and physiological characters under Al stress in upland rice. We used physiological characters and the Snpb11 marker to justify the Al tolerance level in several upland rice varieties. We found that physiological characters, i.e.: primary root length, total root length, chlorophyll, and carotenoid content showed positive correlation to Snpb11. Conversely, root malondialdehyde content, which represents the level of lipid peroxidation showed a negative correlation to Snpb11. There is evidence that the Snpb11 highly correlated with primary and total root length characters, which are the Al tolerance parameters used in rice. Therefore, Snpb11 markers can be used to distinguish the Al tolerance level in upland rice.
format	article
author	MIFTAHUL HUDA FENDIYANTO RIZKY DWI SATRIO SUHARSONO SUHARSONO ARIS TJAHJOLEKSONO M MIFTAHUDIN
author_facet	MIFTAHUL HUDA FENDIYANTO RIZKY DWI SATRIO SUHARSONO SUHARSONO ARIS TJAHJOLEKSONO M MIFTAHUDIN
author_sort	MIFTAHUL HUDA FENDIYANTO
title	Correlation among Snpb11 markers, root growth, and physiological characters of upland rice under aluminum stress
title_short	Correlation among Snpb11 markers, root growth, and physiological characters of upland rice under aluminum stress
title_full	Correlation among Snpb11 markers, root growth, and physiological characters of upland rice under aluminum stress
title_fullStr	Correlation among Snpb11 markers, root growth, and physiological characters of upland rice under aluminum stress
title_full_unstemmed	Correlation among Snpb11 markers, root growth, and physiological characters of upland rice under aluminum stress
title_sort	correlation among snpb11 markers, root growth, and physiological characters of upland rice under aluminum stress
publisher	MBI & UNS Solo
publishDate	2019
url	https://doaj.org/article/d2682fe8e29b4f67817e66d284dbe12c
work_keys_str_mv	AT miftahulhudafendiyanto correlationamongsnpb11markersrootgrowthandphysiologicalcharactersofuplandriceunderaluminumstress AT rizkydwisatrio correlationamongsnpb11markersrootgrowthandphysiologicalcharactersofuplandriceunderaluminumstress AT suharsonosuharsono correlationamongsnpb11markersrootgrowthandphysiologicalcharactersofuplandriceunderaluminumstress AT aristjahjoleksono correlationamongsnpb11markersrootgrowthandphysiologicalcharactersofuplandriceunderaluminumstress AT mmiftahudin correlationamongsnpb11markersrootgrowthandphysiologicalcharactersofuplandriceunderaluminumstress
_version_	1718418669577437184

Correlation among Snpb11 markers, root growth, and physiological characters of upland rice under aluminum stress

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