Worldwide patterns of ancestry, divergence, and admixture in domesticated cattle.

The domestication and development of cattle has considerably impacted human societies, but the histories of cattle breeds and populations have been poorly understood especially for African, Asian, and American breeds. Using genotypes from 43,043 autosomal single nucleotide polymorphism markers score...

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Autores principales:	Jared E Decker, Stephanie D McKay, Megan M Rolf, Jaewoo Kim, Antonio Molina Alcalá, Tad S Sonstegard, Olivier Hanotte, Anders Götherström, Christopher M Seabury, Lisa Praharani, Masroor Ellahi Babar, Luciana Correia de Almeida Regitano, Mehmet Ali Yildiz, Michael P Heaton, Wan-Sheng Liu, Chu-Zhao Lei, James M Reecy, Muhammad Saif-Ur-Rehman, Robert D Schnabel, Jeremy F Taylor
Formato:	article
Lenguaje:	EN
Publicado:	Public Library of Science (PLoS) 2014
Materias:	Genetics QH426-470
Acceso en línea:	https://doaj.org/article/d326682f1f4d4a23a06c1556d08f7c1b
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spelling	oai:doaj.org-article:d326682f1f4d4a23a06c1556d08f7c1b2021-11-18T06:20:58ZWorldwide patterns of ancestry, divergence, and admixture in domesticated cattle.1553-73901553-740410.1371/journal.pgen.1004254https://doaj.org/article/d326682f1f4d4a23a06c1556d08f7c1b2014-03-01T00:00:00Zhttps://www.ncbi.nlm.nih.gov/pmc/articles/pmid/24675901/?tool=EBIhttps://doaj.org/toc/1553-7390https://doaj.org/toc/1553-7404The domestication and development of cattle has considerably impacted human societies, but the histories of cattle breeds and populations have been poorly understood especially for African, Asian, and American breeds. Using genotypes from 43,043 autosomal single nucleotide polymorphism markers scored in 1,543 animals, we evaluate the population structure of 134 domesticated bovid breeds. Regardless of the analytical method or sample subset, the three major groups of Asian indicine, Eurasian taurine, and African taurine were consistently observed. Patterns of geographic dispersal resulting from co-migration with humans and exportation are recognizable in phylogenetic networks. All analytical methods reveal patterns of hybridization which occurred after divergence. Using 19 breeds, we map the cline of indicine introgression into Africa. We infer that African taurine possess a large portion of wild African auroch ancestry, causing their divergence from Eurasian taurine. We detect exportation patterns in Asia and identify a cline of Eurasian taurine/indicine hybridization in Asia. We also identify the influence of species other than Bos taurus taurus and B. t. indicus in the formation of Asian breeds. We detect the pronounced influence of Shorthorn cattle in the formation of European breeds. Iberian and Italian cattle possess introgression from African taurine. American Criollo cattle originate from Iberia, and not directly from Africa with African ancestry inherited via Iberian ancestors. Indicine introgression into American cattle occurred in the Americas, and not Europe. We argue that cattle migration, movement and trading followed by admixture have been important forces in shaping modern bovine genomic variation.Jared E DeckerStephanie D McKayMegan M RolfJaewoo KimAntonio Molina AlcaláTad S SonstegardOlivier HanotteAnders GötherströmChristopher M SeaburyLisa PraharaniMasroor Ellahi BabarLuciana Correia de Almeida RegitanoMehmet Ali YildizMichael P HeatonWan-Sheng LiuChu-Zhao LeiJames M ReecyMuhammad Saif-Ur-RehmanRobert D SchnabelJeremy F TaylorPublic Library of Science (PLoS)articleGeneticsQH426-470ENPLoS Genetics, Vol 10, Iss 3, p e1004254 (2014)
institution	DOAJ
collection	DOAJ
language	EN
topic	Genetics QH426-470
spellingShingle	Genetics QH426-470 Jared E Decker Stephanie D McKay Megan M Rolf Jaewoo Kim Antonio Molina Alcalá Tad S Sonstegard Olivier Hanotte Anders Götherström Christopher M Seabury Lisa Praharani Masroor Ellahi Babar Luciana Correia de Almeida Regitano Mehmet Ali Yildiz Michael P Heaton Wan-Sheng Liu Chu-Zhao Lei James M Reecy Muhammad Saif-Ur-Rehman Robert D Schnabel Jeremy F Taylor Worldwide patterns of ancestry, divergence, and admixture in domesticated cattle.
description	The domestication and development of cattle has considerably impacted human societies, but the histories of cattle breeds and populations have been poorly understood especially for African, Asian, and American breeds. Using genotypes from 43,043 autosomal single nucleotide polymorphism markers scored in 1,543 animals, we evaluate the population structure of 134 domesticated bovid breeds. Regardless of the analytical method or sample subset, the three major groups of Asian indicine, Eurasian taurine, and African taurine were consistently observed. Patterns of geographic dispersal resulting from co-migration with humans and exportation are recognizable in phylogenetic networks. All analytical methods reveal patterns of hybridization which occurred after divergence. Using 19 breeds, we map the cline of indicine introgression into Africa. We infer that African taurine possess a large portion of wild African auroch ancestry, causing their divergence from Eurasian taurine. We detect exportation patterns in Asia and identify a cline of Eurasian taurine/indicine hybridization in Asia. We also identify the influence of species other than Bos taurus taurus and B. t. indicus in the formation of Asian breeds. We detect the pronounced influence of Shorthorn cattle in the formation of European breeds. Iberian and Italian cattle possess introgression from African taurine. American Criollo cattle originate from Iberia, and not directly from Africa with African ancestry inherited via Iberian ancestors. Indicine introgression into American cattle occurred in the Americas, and not Europe. We argue that cattle migration, movement and trading followed by admixture have been important forces in shaping modern bovine genomic variation.
format	article
author	Jared E Decker Stephanie D McKay Megan M Rolf Jaewoo Kim Antonio Molina Alcalá Tad S Sonstegard Olivier Hanotte Anders Götherström Christopher M Seabury Lisa Praharani Masroor Ellahi Babar Luciana Correia de Almeida Regitano Mehmet Ali Yildiz Michael P Heaton Wan-Sheng Liu Chu-Zhao Lei James M Reecy Muhammad Saif-Ur-Rehman Robert D Schnabel Jeremy F Taylor
author_facet	Jared E Decker Stephanie D McKay Megan M Rolf Jaewoo Kim Antonio Molina Alcalá Tad S Sonstegard Olivier Hanotte Anders Götherström Christopher M Seabury Lisa Praharani Masroor Ellahi Babar Luciana Correia de Almeida Regitano Mehmet Ali Yildiz Michael P Heaton Wan-Sheng Liu Chu-Zhao Lei James M Reecy Muhammad Saif-Ur-Rehman Robert D Schnabel Jeremy F Taylor
author_sort	Jared E Decker
title	Worldwide patterns of ancestry, divergence, and admixture in domesticated cattle.
title_short	Worldwide patterns of ancestry, divergence, and admixture in domesticated cattle.
title_full	Worldwide patterns of ancestry, divergence, and admixture in domesticated cattle.
title_fullStr	Worldwide patterns of ancestry, divergence, and admixture in domesticated cattle.
title_full_unstemmed	Worldwide patterns of ancestry, divergence, and admixture in domesticated cattle.
title_sort	worldwide patterns of ancestry, divergence, and admixture in domesticated cattle.
publisher	Public Library of Science (PLoS)
publishDate	2014
url	https://doaj.org/article/d326682f1f4d4a23a06c1556d08f7c1b
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Worldwide patterns of ancestry, divergence, and admixture in domesticated cattle.

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