Sequence variation of captive Malayan Gaur (Bos gaurus hubbacki) based on mitochondrial D-loop region DNA sequences

Md-Zain BM, Abdul-Aziz A, Aifat NR, Mohd-Yusof NS, Norsyamimi R, Rovie-Ryan JJ, Karuppannan KV, Zulkifli NA, Yaakop S. 2018. Sequence variation of captive Malayan Gaur (Bos gaurus hubbacki) based on mitochondrial D-loop region DNA sequences. Biodiversitas 19: 1601-1606. Malayan gaur (Bos gaurus hubb...

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Autores principales:	BADRUL MUNIR MD-ZAIN, AQILAH ABDUL-AZIZ, NUR SYAFIKA MOHD-YUSUF, ROSLI NORSYAMIMI, JEFFRINE JAPNING ROVIE-RYAN, KAYAL VIZI KARUPPANNAN, NADIATUR AKMAR ZULKIFLI, SALMAH YAAKOP
Formato:	article
Lenguaje:	EN
Publicado:	MBI & UNS Solo 2018
Materias:	malayan gaur bos gaurus hubbacki genetic variation dna sequence seladang Biology (General) QH301-705.5
Acceso en línea:	https://doaj.org/article/d35a4aafe30249788a9c5372fc84ce62
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spelling	oai:doaj.org-article:d35a4aafe30249788a9c5372fc84ce622021-11-16T14:04:05ZSequence variation of captive Malayan Gaur (Bos gaurus hubbacki) based on mitochondrial D-loop region DNA sequences1412-033X2085-472210.13057/biodiv/d190501https://doaj.org/article/d35a4aafe30249788a9c5372fc84ce622018-09-01T00:00:00Zhttps://smujo.id/biodiv/article/view/2917https://doaj.org/toc/1412-033Xhttps://doaj.org/toc/2085-4722Md-Zain BM, Abdul-Aziz A, Aifat NR, Mohd-Yusof NS, Norsyamimi R, Rovie-Ryan JJ, Karuppannan KV, Zulkifli NA, Yaakop S. 2018. Sequence variation of captive Malayan Gaur (Bos gaurus hubbacki) based on mitochondrial D-loop region DNA sequences. Biodiversitas 19: 1601-1606. Malayan gaur (Bos gaurus hubbacki) can only be found in Peninsular Malaysia and southern Thailand. The International Union for Conservation of Nature (IUCN) has listed Malayan gaur in the Red List as vulnerable. The main objective of this study was to investigate sequence variation in the mitochondrial D-loop region of B. g. hubbacki from two captive centers. We collected 30 DNA samples of Malayan gaur from Jenderak Selatan Wildlife Conservation Center in Pahang and the Sungkai Wildlife Reserve in Perak. Polymerase chain reactions were performed to amplify all the samples. DNA sequences were analyzed using Neighbor-Joining (NJ) and Maximum Parsimony (MP) methods. Based on the 652 base pairs obtained, we found only seven variable characters with a value of 1% and a genetic distance between the two captive centers of 0.001. Haplotype analyses using DnaSP software detected only four haplotypes between these two captive centers. Both NJ and MP trees portrayed all Malayan gaur individuals in Jenderak Selatan and Sungkai captive centers as belonging to the same clade. Genetic variation of Malayan gaur in these centers is considered low due to individuals possibly sharing the same common parent. This sequence variation information is of paramount importance for the proper breeding and conservation management program of Malayan gaur in the future.BADRUL MUNIR MD-ZAINAQILAH ABDUL-AZIZNUR SYAFIKA MOHD-YUSUFROSLI NORSYAMIMIJEFFRINE JAPNING ROVIE-RYANKAYAL VIZI KARUPPANNANNADIATUR AKMAR ZULKIFLISALMAH YAAKOPMBI & UNS Soloarticlemalayan gaurbos gaurus hubbackigenetic variationdna sequenceseladangBiology (General)QH301-705.5ENBiodiversitas, Vol 19, Iss 5, Pp 1601-1606 (2018)
institution	DOAJ
collection	DOAJ
language	EN
topic	malayan gaur bos gaurus hubbacki genetic variation dna sequence seladang Biology (General) QH301-705.5
spellingShingle	malayan gaur bos gaurus hubbacki genetic variation dna sequence seladang Biology (General) QH301-705.5 BADRUL MUNIR MD-ZAIN AQILAH ABDUL-AZIZ NUR SYAFIKA MOHD-YUSUF ROSLI NORSYAMIMI JEFFRINE JAPNING ROVIE-RYAN KAYAL VIZI KARUPPANNAN NADIATUR AKMAR ZULKIFLI SALMAH YAAKOP Sequence variation of captive Malayan Gaur (Bos gaurus hubbacki) based on mitochondrial D-loop region DNA sequences
description	Md-Zain BM, Abdul-Aziz A, Aifat NR, Mohd-Yusof NS, Norsyamimi R, Rovie-Ryan JJ, Karuppannan KV, Zulkifli NA, Yaakop S. 2018. Sequence variation of captive Malayan Gaur (Bos gaurus hubbacki) based on mitochondrial D-loop region DNA sequences. Biodiversitas 19: 1601-1606. Malayan gaur (Bos gaurus hubbacki) can only be found in Peninsular Malaysia and southern Thailand. The International Union for Conservation of Nature (IUCN) has listed Malayan gaur in the Red List as vulnerable. The main objective of this study was to investigate sequence variation in the mitochondrial D-loop region of B. g. hubbacki from two captive centers. We collected 30 DNA samples of Malayan gaur from Jenderak Selatan Wildlife Conservation Center in Pahang and the Sungkai Wildlife Reserve in Perak. Polymerase chain reactions were performed to amplify all the samples. DNA sequences were analyzed using Neighbor-Joining (NJ) and Maximum Parsimony (MP) methods. Based on the 652 base pairs obtained, we found only seven variable characters with a value of 1% and a genetic distance between the two captive centers of 0.001. Haplotype analyses using DnaSP software detected only four haplotypes between these two captive centers. Both NJ and MP trees portrayed all Malayan gaur individuals in Jenderak Selatan and Sungkai captive centers as belonging to the same clade. Genetic variation of Malayan gaur in these centers is considered low due to individuals possibly sharing the same common parent. This sequence variation information is of paramount importance for the proper breeding and conservation management program of Malayan gaur in the future.
format	article
author	BADRUL MUNIR MD-ZAIN AQILAH ABDUL-AZIZ NUR SYAFIKA MOHD-YUSUF ROSLI NORSYAMIMI JEFFRINE JAPNING ROVIE-RYAN KAYAL VIZI KARUPPANNAN NADIATUR AKMAR ZULKIFLI SALMAH YAAKOP
author_facet	BADRUL MUNIR MD-ZAIN AQILAH ABDUL-AZIZ NUR SYAFIKA MOHD-YUSUF ROSLI NORSYAMIMI JEFFRINE JAPNING ROVIE-RYAN KAYAL VIZI KARUPPANNAN NADIATUR AKMAR ZULKIFLI SALMAH YAAKOP
author_sort	BADRUL MUNIR MD-ZAIN
title	Sequence variation of captive Malayan Gaur (Bos gaurus hubbacki) based on mitochondrial D-loop region DNA sequences
title_short	Sequence variation of captive Malayan Gaur (Bos gaurus hubbacki) based on mitochondrial D-loop region DNA sequences
title_full	Sequence variation of captive Malayan Gaur (Bos gaurus hubbacki) based on mitochondrial D-loop region DNA sequences
title_fullStr	Sequence variation of captive Malayan Gaur (Bos gaurus hubbacki) based on mitochondrial D-loop region DNA sequences
title_full_unstemmed	Sequence variation of captive Malayan Gaur (Bos gaurus hubbacki) based on mitochondrial D-loop region DNA sequences
title_sort	sequence variation of captive malayan gaur (bos gaurus hubbacki) based on mitochondrial d-loop region dna sequences
publisher	MBI & UNS Solo
publishDate	2018
url	https://doaj.org/article/d35a4aafe30249788a9c5372fc84ce62
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Sequence variation of captive Malayan Gaur (Bos gaurus hubbacki) based on mitochondrial D-loop region DNA sequences

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