De novo compartment deconvolution and weight estimation of tumor samples using DECODER

Separating different cell compartments from bulk gene expression data can be challenging. Here the authors present DECODER, which can perform de novo deconvolutions on non-negative matrices including microarray, RNA-seq and ATAC-seq data sets.

Guardado en:

Detalles Bibliográficos
Autores principales:	Xianlu Laura Peng, Richard A. Moffitt, Robert J. Torphy, Keith E. Volmar, Jen Jen Yeh
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2019
Materias:	Science Q
Acceso en línea:	https://doaj.org/article/d36eff381c324e13b089aca37650d569
Etiquetas:	Agregar Etiqueta Sin Etiquetas, Sea el primero en etiquetar este registro!

id	oai:doaj.org-article:d36eff381c324e13b089aca37650d569
record_format	dspace
spelling	oai:doaj.org-article:d36eff381c324e13b089aca37650d5692021-12-02T15:36:02ZDe novo compartment deconvolution and weight estimation of tumor samples using DECODER10.1038/s41467-019-12517-72041-1723https://doaj.org/article/d36eff381c324e13b089aca37650d5692019-10-01T00:00:00Zhttps://doi.org/10.1038/s41467-019-12517-7https://doaj.org/toc/2041-1723Separating different cell compartments from bulk gene expression data can be challenging. Here the authors present DECODER, which can perform de novo deconvolutions on non-negative matrices including microarray, RNA-seq and ATAC-seq data sets.Xianlu Laura PengRichard A. MoffittRobert J. TorphyKeith E. VolmarJen Jen YehNature PortfolioarticleScienceQENNature Communications, Vol 10, Iss 1, Pp 1-11 (2019)
institution	DOAJ
collection	DOAJ
language	EN
topic	Science Q
spellingShingle	Science Q Xianlu Laura Peng Richard A. Moffitt Robert J. Torphy Keith E. Volmar Jen Jen Yeh De novo compartment deconvolution and weight estimation of tumor samples using DECODER
description	Separating different cell compartments from bulk gene expression data can be challenging. Here the authors present DECODER, which can perform de novo deconvolutions on non-negative matrices including microarray, RNA-seq and ATAC-seq data sets.
format	article
author	Xianlu Laura Peng Richard A. Moffitt Robert J. Torphy Keith E. Volmar Jen Jen Yeh
author_facet	Xianlu Laura Peng Richard A. Moffitt Robert J. Torphy Keith E. Volmar Jen Jen Yeh
author_sort	Xianlu Laura Peng
title	De novo compartment deconvolution and weight estimation of tumor samples using DECODER
title_short	De novo compartment deconvolution and weight estimation of tumor samples using DECODER
title_full	De novo compartment deconvolution and weight estimation of tumor samples using DECODER
title_fullStr	De novo compartment deconvolution and weight estimation of tumor samples using DECODER
title_full_unstemmed	De novo compartment deconvolution and weight estimation of tumor samples using DECODER
title_sort	de novo compartment deconvolution and weight estimation of tumor samples using decoder
publisher	Nature Portfolio
publishDate	2019
url	https://doaj.org/article/d36eff381c324e13b089aca37650d569
work_keys_str_mv	AT xianlulaurapeng denovocompartmentdeconvolutionandweightestimationoftumorsamplesusingdecoder AT richardamoffitt denovocompartmentdeconvolutionandweightestimationoftumorsamplesusingdecoder AT robertjtorphy denovocompartmentdeconvolutionandweightestimationoftumorsamplesusingdecoder AT keithevolmar denovocompartmentdeconvolutionandweightestimationoftumorsamplesusingdecoder AT jenjenyeh denovocompartmentdeconvolutionandweightestimationoftumorsamplesusingdecoder
_version_	1718386384153083904

De novo compartment deconvolution and weight estimation of tumor samples using DECODER

Ejemplares similares