CyanoPhyChe: a database for physico-chemical properties, structure and biochemical pathway information of cyanobacterial proteins.

CyanoPhyChe is a user friendly database that one can browse through for physico-chemical properties, structure and biochemical pathway information of cyanobacterial proteins. We downloaded all the protein sequences from the cyanobacterial genome database for calculating the physico-chemical properti...

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Autores principales:	P V Parvati Sai Arun, Ranjith Kumar Bakku, Mranu Subhashini, Pankaj Singh, N Prakash Prabhu, Iwane Suzuki, Jogadhenu S S Prakash
Formato:	article
Lenguaje:	EN
Publicado:	Public Library of Science (PLoS) 2012
Materias:	Medicine R Science Q
Acceso en línea:	https://doaj.org/article/d47e882d5d89461397c4507a79d92011
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id	oai:doaj.org-article:d47e882d5d89461397c4507a79d92011
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spelling	oai:doaj.org-article:d47e882d5d89461397c4507a79d920112021-11-18T08:08:00ZCyanoPhyChe: a database for physico-chemical properties, structure and biochemical pathway information of cyanobacterial proteins.1932-620310.1371/journal.pone.0049425https://doaj.org/article/d47e882d5d89461397c4507a79d920112012-01-01T00:00:00Zhttps://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23185330/?tool=EBIhttps://doaj.org/toc/1932-6203CyanoPhyChe is a user friendly database that one can browse through for physico-chemical properties, structure and biochemical pathway information of cyanobacterial proteins. We downloaded all the protein sequences from the cyanobacterial genome database for calculating the physico-chemical properties, such as molecular weight, net charge of protein, isoelectric point, molar extinction coefficient, canonical variable for solubility, grand average hydropathy, aliphatic index, and number of charged residues. Based on the physico-chemical properties, we provide the polarity, structural stability and probability of a protein entering in to an inclusion body (PEPIB). We used the data generated on physico-chemical properties, structure and biochemical pathway information of all cyanobacterial proteins to construct CyanoPhyChe. The data can be used for optimizing methods of expression and characterization of cyanobacterial proteins. Moreover, the 'Search' and data export options provided will be useful for proteome analysis. Secondary structure was predicted for all the cyanobacterial proteins using PSIPRED tool and the data generated is made accessible to researchers working on cyanobacteria. In addition, external links are provided to biological databases such as PDB and KEGG for molecular structure and biochemical pathway information, respectively. External links are also provided to different cyanobacterial databases. CyanoPhyChe can be accessed from the following URL: http://bif.uohyd.ac.in/cpc.P V Parvati Sai ArunRanjith Kumar BakkuMranu SubhashiniPankaj SinghN Prakash PrabhuIwane SuzukiJogadhenu S S PrakashPublic Library of Science (PLoS)articleMedicineRScienceQENPLoS ONE, Vol 7, Iss 11, p e49425 (2012)
institution	DOAJ
collection	DOAJ
language	EN
topic	Medicine R Science Q
spellingShingle	Medicine R Science Q P V Parvati Sai Arun Ranjith Kumar Bakku Mranu Subhashini Pankaj Singh N Prakash Prabhu Iwane Suzuki Jogadhenu S S Prakash CyanoPhyChe: a database for physico-chemical properties, structure and biochemical pathway information of cyanobacterial proteins.
description	CyanoPhyChe is a user friendly database that one can browse through for physico-chemical properties, structure and biochemical pathway information of cyanobacterial proteins. We downloaded all the protein sequences from the cyanobacterial genome database for calculating the physico-chemical properties, such as molecular weight, net charge of protein, isoelectric point, molar extinction coefficient, canonical variable for solubility, grand average hydropathy, aliphatic index, and number of charged residues. Based on the physico-chemical properties, we provide the polarity, structural stability and probability of a protein entering in to an inclusion body (PEPIB). We used the data generated on physico-chemical properties, structure and biochemical pathway information of all cyanobacterial proteins to construct CyanoPhyChe. The data can be used for optimizing methods of expression and characterization of cyanobacterial proteins. Moreover, the 'Search' and data export options provided will be useful for proteome analysis. Secondary structure was predicted for all the cyanobacterial proteins using PSIPRED tool and the data generated is made accessible to researchers working on cyanobacteria. In addition, external links are provided to biological databases such as PDB and KEGG for molecular structure and biochemical pathway information, respectively. External links are also provided to different cyanobacterial databases. CyanoPhyChe can be accessed from the following URL: http://bif.uohyd.ac.in/cpc.
format	article
author	P V Parvati Sai Arun Ranjith Kumar Bakku Mranu Subhashini Pankaj Singh N Prakash Prabhu Iwane Suzuki Jogadhenu S S Prakash
author_facet	P V Parvati Sai Arun Ranjith Kumar Bakku Mranu Subhashini Pankaj Singh N Prakash Prabhu Iwane Suzuki Jogadhenu S S Prakash
author_sort	P V Parvati Sai Arun
title	CyanoPhyChe: a database for physico-chemical properties, structure and biochemical pathway information of cyanobacterial proteins.
title_short	CyanoPhyChe: a database for physico-chemical properties, structure and biochemical pathway information of cyanobacterial proteins.
title_full	CyanoPhyChe: a database for physico-chemical properties, structure and biochemical pathway information of cyanobacterial proteins.
title_fullStr	CyanoPhyChe: a database for physico-chemical properties, structure and biochemical pathway information of cyanobacterial proteins.
title_full_unstemmed	CyanoPhyChe: a database for physico-chemical properties, structure and biochemical pathway information of cyanobacterial proteins.
title_sort	cyanophyche: a database for physico-chemical properties, structure and biochemical pathway information of cyanobacterial proteins.
publisher	Public Library of Science (PLoS)
publishDate	2012
url	https://doaj.org/article/d47e882d5d89461397c4507a79d92011
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CyanoPhyChe: a database for physico-chemical properties, structure and biochemical pathway information of cyanobacterial proteins.

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