Centromere evolution and CpG methylation during vertebrate speciation

Centromere evolution and CpG methylation during vertebrate speciation

Centromeres and large-scale structural variants evolve and contribute to genome diversity during vertebrate speciation. Here Ichikawa et al perform de novo long-read genome assembly of three inbred medaka strains, and report long-range structure of centromeres and their methylation as well as correl...

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Autores principales: Kazuki Ichikawa, Shingo Tomioka, Yuta Suzuki, Ryohei Nakamura, Koichiro Doi, Jun Yoshimura, Masahiko Kumagai, Yusuke Inoue, Yui Uchida, Naoki Irie, Hiroyuki Takeda, Shinich Morishita
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Lenguaje:EN
Publicado: Nature Portfolio 2017
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Acceso en línea:https://doaj.org/article/d5a7e6e3dfc248a8aade930ee660eb97
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spelling oai:doaj.org-article:d5a7e6e3dfc248a8aade930ee660eb972021-12-02T17:01:16ZCentromere evolution and CpG methylation during vertebrate speciation10.1038/s41467-017-01982-72041-1723https://doaj.org/article/d5a7e6e3dfc248a8aade930ee660eb972017-11-01T00:00:00Zhttps://doi.org/10.1038/s41467-017-01982-7https://doaj.org/toc/2041-1723Centromeres and large-scale structural variants evolve and contribute to genome diversity during vertebrate speciation. Here Ichikawa et al perform de novo long-read genome assembly of three inbred medaka strains, and report long-range structure of centromeres and their methylation as well as correlation of structural variants with differential gene expression.Kazuki IchikawaShingo TomiokaYuta SuzukiRyohei NakamuraKoichiro DoiJun YoshimuraMasahiko KumagaiYusuke InoueYui UchidaNaoki IrieHiroyuki TakedaShinich MorishitaNature PortfolioarticleScienceQENNature Communications, Vol 8, Iss 1, Pp 1-11 (2017)
institution DOAJ
collection DOAJ
language EN
topic Science
Q
spellingShingle Science
Q
Kazuki Ichikawa
Shingo Tomioka
Yuta Suzuki
Ryohei Nakamura
Koichiro Doi
Jun Yoshimura
Masahiko Kumagai
Yusuke Inoue
Yui Uchida
Naoki Irie
Hiroyuki Takeda
Shinich Morishita
Centromere evolution and CpG methylation during vertebrate speciation
description Centromeres and large-scale structural variants evolve and contribute to genome diversity during vertebrate speciation. Here Ichikawa et al perform de novo long-read genome assembly of three inbred medaka strains, and report long-range structure of centromeres and their methylation as well as correlation of structural variants with differential gene expression.
format article
author Kazuki Ichikawa
Shingo Tomioka
Yuta Suzuki
Ryohei Nakamura
Koichiro Doi
Jun Yoshimura
Masahiko Kumagai
Yusuke Inoue
Yui Uchida
Naoki Irie
Hiroyuki Takeda
Shinich Morishita
author_facet Kazuki Ichikawa
Shingo Tomioka
Yuta Suzuki
Ryohei Nakamura
Koichiro Doi
Jun Yoshimura
Masahiko Kumagai
Yusuke Inoue
Yui Uchida
Naoki Irie
Hiroyuki Takeda
Shinich Morishita
author_sort Kazuki Ichikawa
title Centromere evolution and CpG methylation during vertebrate speciation
title_short Centromere evolution and CpG methylation during vertebrate speciation
title_full Centromere evolution and CpG methylation during vertebrate speciation
title_fullStr Centromere evolution and CpG methylation during vertebrate speciation
title_full_unstemmed Centromere evolution and CpG methylation during vertebrate speciation
title_sort centromere evolution and cpg methylation during vertebrate speciation
publisher Nature Portfolio
publishDate 2017
url https://doaj.org/article/d5a7e6e3dfc248a8aade930ee660eb97
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AT shingotomioka centromereevolutionandcpgmethylationduringvertebratespeciation
AT yutasuzuki centromereevolutionandcpgmethylationduringvertebratespeciation
AT ryoheinakamura centromereevolutionandcpgmethylationduringvertebratespeciation
AT koichirodoi centromereevolutionandcpgmethylationduringvertebratespeciation
AT junyoshimura centromereevolutionandcpgmethylationduringvertebratespeciation
AT masahikokumagai centromereevolutionandcpgmethylationduringvertebratespeciation
AT yusukeinoue centromereevolutionandcpgmethylationduringvertebratespeciation
AT yuiuchida centromereevolutionandcpgmethylationduringvertebratespeciation
AT naokiirie centromereevolutionandcpgmethylationduringvertebratespeciation
AT hiroyukitakeda centromereevolutionandcpgmethylationduringvertebratespeciation
AT shinichmorishita centromereevolutionandcpgmethylationduringvertebratespeciation
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