Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance
To our knowledge, this is the first study to identify the bacteriophage distribution in a groundwater ecosystem shedding light on their prevalence and distribution across metal-contaminated and background sites. Our study is uniquely based on selective sequencing of solely the extrachromosomal elem...
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American Society for Microbiology
2021
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oai:doaj.org-article:d5c0fb7dc7c14eb0aa58849b0dcd52ae2021-12-02T17:22:37ZEcogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance2379-507710.1128/mSystems.00537-21https://doaj.org/article/d5c0fb7dc7c14eb0aa58849b0dcd52ae2021-06-01T00:00:00Zhttps://journals.asm.org/doi/10.1128/mSystems.00537-21https://doaj.org/toc/2379-5077 To our knowledge, this is the first study to identify the bacteriophage distribution in a groundwater ecosystem shedding light on their prevalence and distribution across metal-contaminated and background sites. Our study is uniquely based on selective sequencing of solely the extrachromosomal elements of a microbiome followed by analysis for viral signatures, thus establishing a more focused approach for phage identifications.Ankita KothariSimon RouxHanqiao ZhangAnatori PrietoDrishti SonejaJohn-Marc ChandoniaSarah SpencerXiaoqin WuSara AltenburgMatthew W. FieldsAdam M. DeutschbauerAdam P. ArkinEric J. AlmRomy ChakrabortyAindrila MukhopadhyayAmerican Society for MicrobiologyarticleMicrobiologyQR1-502ENmSystems, Vol 6, Iss 3 (2021) |
| institution |
DOAJ |
| collection |
DOAJ |
| language |
EN |
| topic |
Microbiology QR1-502 |
| spellingShingle |
Microbiology QR1-502 Ankita Kothari Simon Roux Hanqiao Zhang Anatori Prieto Drishti Soneja John-Marc Chandonia Sarah Spencer Xiaoqin Wu Sara Altenburg Matthew W. Fields Adam M. Deutschbauer Adam P. Arkin Eric J. Alm Romy Chakraborty Aindrila Mukhopadhyay Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance |
| description |
To our knowledge, this is the first study to identify the bacteriophage distribution in a groundwater ecosystem shedding light on their prevalence and distribution across metal-contaminated and background sites. Our study is uniquely based on selective sequencing of solely the extrachromosomal elements of a microbiome followed by analysis for viral signatures, thus establishing a more focused approach for phage identifications. |
| format |
article |
| author |
Ankita Kothari Simon Roux Hanqiao Zhang Anatori Prieto Drishti Soneja John-Marc Chandonia Sarah Spencer Xiaoqin Wu Sara Altenburg Matthew W. Fields Adam M. Deutschbauer Adam P. Arkin Eric J. Alm Romy Chakraborty Aindrila Mukhopadhyay |
| author_facet |
Ankita Kothari Simon Roux Hanqiao Zhang Anatori Prieto Drishti Soneja John-Marc Chandonia Sarah Spencer Xiaoqin Wu Sara Altenburg Matthew W. Fields Adam M. Deutschbauer Adam P. Arkin Eric J. Alm Romy Chakraborty Aindrila Mukhopadhyay |
| author_sort |
Ankita Kothari |
| title |
Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance |
| title_short |
Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance |
| title_full |
Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance |
| title_fullStr |
Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance |
| title_full_unstemmed |
Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance |
| title_sort |
ecogenomics of groundwater phages suggests niche differentiation linked to specific environmental tolerance |
| publisher |
American Society for Microbiology |
| publishDate |
2021 |
| url |
https://doaj.org/article/d5c0fb7dc7c14eb0aa58849b0dcd52ae |
| work_keys_str_mv |
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