Transcriptome analysis of the scleractinian coral Stylophora pistillata.

The principal architects of coral reefs are the scleractinian corals; these species are divided in two major clades referred to as "robust" and "complex" corals. Although the molecular diversity of the "complex" clade has received considerable attention, with several ex...

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Autores principales:	Sarit Karako-Lampert, Didier Zoccola, Mali Salmon-Divon, Mark Katzenellenbogen, Sylvie Tambutté, Anthony Bertucci, Ove Hoegh-Guldberg, Emeline Deleury, Denis Allemand, Oren Levy
Formato:	article
Lenguaje:	EN
Publicado:	Public Library of Science (PLoS) 2014
Materias:	Medicine R Science Q
Acceso en línea:	https://doaj.org/article/d8183db1a8874ceba27162fc9ad838c1
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spelling	oai:doaj.org-article:d8183db1a8874ceba27162fc9ad838c12021-11-18T08:32:38ZTranscriptome analysis of the scleractinian coral Stylophora pistillata.1932-620310.1371/journal.pone.0088615https://doaj.org/article/d8183db1a8874ceba27162fc9ad838c12014-01-01T00:00:00Zhttps://www.ncbi.nlm.nih.gov/pmc/articles/pmid/24551124/pdf/?tool=EBIhttps://doaj.org/toc/1932-6203The principal architects of coral reefs are the scleractinian corals; these species are divided in two major clades referred to as "robust" and "complex" corals. Although the molecular diversity of the "complex" clade has received considerable attention, with several expressed sequence tag (EST) libraries and a complete genome sequence having been constructed, the "robust" corals have received far less attention, despite the fact that robust corals have been prominent focal points for ecological and physiological studies. Filling this gap affords important opportunities to extend these studies and to improve our understanding of the differences between the two major clades. Here, we present an EST library from Stylophora pistillata (Esper 1797) and systematically analyze the assembled transcripts compared to putative homologs from the complete proteomes of six well-characterized metazoans: Nematostella vectensis, Hydra magnipapillata, Caenorhabditis elegans, Drosophila melanogaster, Strongylocentrotus purpuratus, Ciona intestinalis and Homo sapiens. Furthermore, comparative analyses of the Stylophora pistillata ESTs were performed against several Cnidaria from the Scleractinia, Actiniaria and Hydrozoa, as well as against other stony corals separately. Functional characterization of S. pistillata transcripts into KOG/COG categories and further description of Wnt and bone morphogenetic protein (BMP) signaling pathways showed that the assembled EST library provides sufficient data and coverage. These features of this new library suggest considerable opportunities for extending our understanding of the molecular and physiological behavior of "robust" corals.Sarit Karako-LampertDidier ZoccolaMali Salmon-DivonMark KatzenellenbogenSylvie TambuttéAnthony BertucciOve Hoegh-GuldbergEmeline DeleuryDenis AllemandOren LevyPublic Library of Science (PLoS)articleMedicineRScienceQENPLoS ONE, Vol 9, Iss 2, p e88615 (2014)
institution	DOAJ
collection	DOAJ
language	EN
topic	Medicine R Science Q
spellingShingle	Medicine R Science Q Sarit Karako-Lampert Didier Zoccola Mali Salmon-Divon Mark Katzenellenbogen Sylvie Tambutté Anthony Bertucci Ove Hoegh-Guldberg Emeline Deleury Denis Allemand Oren Levy Transcriptome analysis of the scleractinian coral Stylophora pistillata.
description	The principal architects of coral reefs are the scleractinian corals; these species are divided in two major clades referred to as "robust" and "complex" corals. Although the molecular diversity of the "complex" clade has received considerable attention, with several expressed sequence tag (EST) libraries and a complete genome sequence having been constructed, the "robust" corals have received far less attention, despite the fact that robust corals have been prominent focal points for ecological and physiological studies. Filling this gap affords important opportunities to extend these studies and to improve our understanding of the differences between the two major clades. Here, we present an EST library from Stylophora pistillata (Esper 1797) and systematically analyze the assembled transcripts compared to putative homologs from the complete proteomes of six well-characterized metazoans: Nematostella vectensis, Hydra magnipapillata, Caenorhabditis elegans, Drosophila melanogaster, Strongylocentrotus purpuratus, Ciona intestinalis and Homo sapiens. Furthermore, comparative analyses of the Stylophora pistillata ESTs were performed against several Cnidaria from the Scleractinia, Actiniaria and Hydrozoa, as well as against other stony corals separately. Functional characterization of S. pistillata transcripts into KOG/COG categories and further description of Wnt and bone morphogenetic protein (BMP) signaling pathways showed that the assembled EST library provides sufficient data and coverage. These features of this new library suggest considerable opportunities for extending our understanding of the molecular and physiological behavior of "robust" corals.
format	article
author	Sarit Karako-Lampert Didier Zoccola Mali Salmon-Divon Mark Katzenellenbogen Sylvie Tambutté Anthony Bertucci Ove Hoegh-Guldberg Emeline Deleury Denis Allemand Oren Levy
author_facet	Sarit Karako-Lampert Didier Zoccola Mali Salmon-Divon Mark Katzenellenbogen Sylvie Tambutté Anthony Bertucci Ove Hoegh-Guldberg Emeline Deleury Denis Allemand Oren Levy
author_sort	Sarit Karako-Lampert
title	Transcriptome analysis of the scleractinian coral Stylophora pistillata.
title_short	Transcriptome analysis of the scleractinian coral Stylophora pistillata.
title_full	Transcriptome analysis of the scleractinian coral Stylophora pistillata.
title_fullStr	Transcriptome analysis of the scleractinian coral Stylophora pistillata.
title_full_unstemmed	Transcriptome analysis of the scleractinian coral Stylophora pistillata.
title_sort	transcriptome analysis of the scleractinian coral stylophora pistillata.
publisher	Public Library of Science (PLoS)
publishDate	2014
url	https://doaj.org/article/d8183db1a8874ceba27162fc9ad838c1
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Transcriptome analysis of the scleractinian coral Stylophora pistillata.

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