Exploring the Microbiome Analysis and Visualization Landscape

Research on the microbiome has boomed recently, which resulted in a wide range of tools, packages, and algorithms to analyze microbiome data. Here we investigate and map currently existing tools that can be used to perform visual analysis on the microbiome, and associate the including methods, visua...

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Autores principales:	Jannes Peeters, Olivier Thas, Ziv Shkedy, Leyla Kodalci, Connie Musisi, Olajumoke Evangelina Owokotomo, Aleksandra Dyczko, Ibrahim Hamad, Jaco Vangronsveld, Markus Kleinewietfeld, Sofie Thijs, Jan Aerts
Formato:	article
Lenguaje:	EN
Publicado:	Frontiers Media S.A. 2021
Materias:	microbiome visual analytics data visualization bioinformatcs data analysis biostatistics Computer applications to medicine. Medical informatics R858-859.7
Acceso en línea:	https://doaj.org/article/db5197a713cc410899431494046cc0fd
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id	oai:doaj.org-article:db5197a713cc410899431494046cc0fd
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spelling	oai:doaj.org-article:db5197a713cc410899431494046cc0fd2021-12-02T11:41:29ZExploring the Microbiome Analysis and Visualization Landscape2673-764710.3389/fbinf.2021.774631https://doaj.org/article/db5197a713cc410899431494046cc0fd2021-12-01T00:00:00Zhttps://www.frontiersin.org/articles/10.3389/fbinf.2021.774631/fullhttps://doaj.org/toc/2673-7647Research on the microbiome has boomed recently, which resulted in a wide range of tools, packages, and algorithms to analyze microbiome data. Here we investigate and map currently existing tools that can be used to perform visual analysis on the microbiome, and associate the including methods, visual representations and data features to the research objectives currently of interest in microbiome research. The analysis is based on a combination of a literature review and workshops including a group of domain experts. Both the reviewing process and workshops are based on domain characterization methods to facilitate communication and collaboration between researchers from different disciplines. We identify several research questions related to microbiomes, and describe how different analysis methods and visualizations help in tackling them.Jannes PeetersOlivier ThasZiv ShkedyLeyla KodalciConnie MusisiOlajumoke Evangelina OwokotomoAleksandra DyczkoAleksandra DyczkoIbrahim HamadIbrahim HamadJaco VangronsveldJaco VangronsveldMarkus KleinewietfeldMarkus KleinewietfeldSofie ThijsJan AertsFrontiers Media S.A.articlemicrobiomevisual analyticsdata visualizationbioinformatcsdata analysisbiostatisticsComputer applications to medicine. Medical informaticsR858-859.7ENFrontiers in Bioinformatics, Vol 1 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	microbiome visual analytics data visualization bioinformatcs data analysis biostatistics Computer applications to medicine. Medical informatics R858-859.7
spellingShingle	microbiome visual analytics data visualization bioinformatcs data analysis biostatistics Computer applications to medicine. Medical informatics R858-859.7 Jannes Peeters Olivier Thas Ziv Shkedy Leyla Kodalci Connie Musisi Olajumoke Evangelina Owokotomo Aleksandra Dyczko Aleksandra Dyczko Ibrahim Hamad Ibrahim Hamad Jaco Vangronsveld Jaco Vangronsveld Markus Kleinewietfeld Markus Kleinewietfeld Sofie Thijs Jan Aerts Exploring the Microbiome Analysis and Visualization Landscape
description	Research on the microbiome has boomed recently, which resulted in a wide range of tools, packages, and algorithms to analyze microbiome data. Here we investigate and map currently existing tools that can be used to perform visual analysis on the microbiome, and associate the including methods, visual representations and data features to the research objectives currently of interest in microbiome research. The analysis is based on a combination of a literature review and workshops including a group of domain experts. Both the reviewing process and workshops are based on domain characterization methods to facilitate communication and collaboration between researchers from different disciplines. We identify several research questions related to microbiomes, and describe how different analysis methods and visualizations help in tackling them.
format	article
author	Jannes Peeters Olivier Thas Ziv Shkedy Leyla Kodalci Connie Musisi Olajumoke Evangelina Owokotomo Aleksandra Dyczko Aleksandra Dyczko Ibrahim Hamad Ibrahim Hamad Jaco Vangronsveld Jaco Vangronsveld Markus Kleinewietfeld Markus Kleinewietfeld Sofie Thijs Jan Aerts
author_facet	Jannes Peeters Olivier Thas Ziv Shkedy Leyla Kodalci Connie Musisi Olajumoke Evangelina Owokotomo Aleksandra Dyczko Aleksandra Dyczko Ibrahim Hamad Ibrahim Hamad Jaco Vangronsveld Jaco Vangronsveld Markus Kleinewietfeld Markus Kleinewietfeld Sofie Thijs Jan Aerts
author_sort	Jannes Peeters
title	Exploring the Microbiome Analysis and Visualization Landscape
title_short	Exploring the Microbiome Analysis and Visualization Landscape
title_full	Exploring the Microbiome Analysis and Visualization Landscape
title_fullStr	Exploring the Microbiome Analysis and Visualization Landscape
title_full_unstemmed	Exploring the Microbiome Analysis and Visualization Landscape
title_sort	exploring the microbiome analysis and visualization landscape
publisher	Frontiers Media S.A.
publishDate	2021
url	https://doaj.org/article/db5197a713cc410899431494046cc0fd
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Exploring the Microbiome Analysis and Visualization Landscape

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