Genome-wide identification of ZF-HD gene family in Triticum aestivum: Molecular evolution mechanism and function analysis.

ZF-HD family genes play important roles in plant growth and development. Studies about the whole genome analysis of ZF-HD gene family have been reported in some plant species. In this study, the whole genome identification and expression profile of the ZF-HD gene family were analyzed for the first t...

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Autores principales:	Hongli Niu, Pengliang Xia, Yifeng Hu, Chuang Zhan, Yiting Li, Shuangjun Gong, Yan Li, Dongfang Ma
Formato:	article
Lenguaje:	EN
Publicado:	Public Library of Science (PLoS) 2021
Materias:	Medicine R Science Q
Acceso en línea:	https://doaj.org/article/e2b45fdb99cc4d399576e90d8a153600
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spelling	oai:doaj.org-article:e2b45fdb99cc4d399576e90d8a1536002021-12-02T20:14:11ZGenome-wide identification of ZF-HD gene family in Triticum aestivum: Molecular evolution mechanism and function analysis.1932-620310.1371/journal.pone.0256579https://doaj.org/article/e2b45fdb99cc4d399576e90d8a1536002021-01-01T00:00:00Zhttps://doi.org/10.1371/journal.pone.0256579https://doaj.org/toc/1932-6203ZF-HD family genes play important roles in plant growth and development. Studies about the whole genome analysis of ZF-HD gene family have been reported in some plant species. In this study, the whole genome identification and expression profile of the ZF-HD gene family were analyzed for the first time in wheat. A total of 37 TaZF-HD genes were identified and divided into TaMIF and TaZHD subfamilies according to the conserved domain. The phylogeny tree of the TaZF-HD proteins was further divided into six groups based on the phylogenetic relationship. The 37 TaZF-HDs were distributed on 18 of 21 chromosomes, and almost all the genes had no introns. Gene duplication and Ka/Ks analysis showed that the gene family may have experienced powerful purification selection pressure during wheat evolution. The qRT-PCR analysis showed that TaZF-HD genes had significant expression patterns in different biotic stress and abiotic stress. Through subcellular localization experiments, we found that TaZHD6-3B was located in the nucleus, while TaMIF4-5D was located in the cell membrane and nucleus. Our research contributes to a comprehensive understanding of the TaZF-HD family, provides a new perspective for further research on the biological functions of TaZF-HD genes in wheat.Hongli NiuPengliang XiaYifeng HuChuang ZhanYiting LiShuangjun GongYan LiDongfang MaPublic Library of Science (PLoS)articleMedicineRScienceQENPLoS ONE, Vol 16, Iss 9, p e0256579 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	Medicine R Science Q
spellingShingle	Medicine R Science Q Hongli Niu Pengliang Xia Yifeng Hu Chuang Zhan Yiting Li Shuangjun Gong Yan Li Dongfang Ma Genome-wide identification of ZF-HD gene family in Triticum aestivum: Molecular evolution mechanism and function analysis.
description	ZF-HD family genes play important roles in plant growth and development. Studies about the whole genome analysis of ZF-HD gene family have been reported in some plant species. In this study, the whole genome identification and expression profile of the ZF-HD gene family were analyzed for the first time in wheat. A total of 37 TaZF-HD genes were identified and divided into TaMIF and TaZHD subfamilies according to the conserved domain. The phylogeny tree of the TaZF-HD proteins was further divided into six groups based on the phylogenetic relationship. The 37 TaZF-HDs were distributed on 18 of 21 chromosomes, and almost all the genes had no introns. Gene duplication and Ka/Ks analysis showed that the gene family may have experienced powerful purification selection pressure during wheat evolution. The qRT-PCR analysis showed that TaZF-HD genes had significant expression patterns in different biotic stress and abiotic stress. Through subcellular localization experiments, we found that TaZHD6-3B was located in the nucleus, while TaMIF4-5D was located in the cell membrane and nucleus. Our research contributes to a comprehensive understanding of the TaZF-HD family, provides a new perspective for further research on the biological functions of TaZF-HD genes in wheat.
format	article
author	Hongli Niu Pengliang Xia Yifeng Hu Chuang Zhan Yiting Li Shuangjun Gong Yan Li Dongfang Ma
author_facet	Hongli Niu Pengliang Xia Yifeng Hu Chuang Zhan Yiting Li Shuangjun Gong Yan Li Dongfang Ma
author_sort	Hongli Niu
title	Genome-wide identification of ZF-HD gene family in Triticum aestivum: Molecular evolution mechanism and function analysis.
title_short	Genome-wide identification of ZF-HD gene family in Triticum aestivum: Molecular evolution mechanism and function analysis.
title_full	Genome-wide identification of ZF-HD gene family in Triticum aestivum: Molecular evolution mechanism and function analysis.
title_fullStr	Genome-wide identification of ZF-HD gene family in Triticum aestivum: Molecular evolution mechanism and function analysis.
title_full_unstemmed	Genome-wide identification of ZF-HD gene family in Triticum aestivum: Molecular evolution mechanism and function analysis.
title_sort	genome-wide identification of zf-hd gene family in triticum aestivum: molecular evolution mechanism and function analysis.
publisher	Public Library of Science (PLoS)
publishDate	2021
url	https://doaj.org/article/e2b45fdb99cc4d399576e90d8a153600
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Genome-wide identification of ZF-HD gene family in Triticum aestivum: Molecular evolution mechanism and function analysis.

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