Metagenomic analysis of the cow, sheep, reindeer and red deer rumen

Abstract The rumen microbiota comprises a community of microorganisms which specialise in the degradation of complex carbohydrates from plant-based feed. These microbes play a highly important role in ruminant nutrition and could also act as sources of industrially useful enzymes. In this study, we...

Descripción completa

Guardado en:

Detalles Bibliográficos
Autores principales:	Laura Glendinning, Buğra Genç, R. John Wallace, Mick Watson
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2021
Materias:	Medicine R Science Q
Acceso en línea:	https://doaj.org/article/e2dfee02ff824099b1ee359adaca2434
Etiquetas:	Agregar Etiqueta Sin Etiquetas, Sea el primero en etiquetar este registro!

id	oai:doaj.org-article:e2dfee02ff824099b1ee359adaca2434
record_format	dspace
spelling	oai:doaj.org-article:e2dfee02ff824099b1ee359adaca24342021-12-02T13:57:05ZMetagenomic analysis of the cow, sheep, reindeer and red deer rumen10.1038/s41598-021-81668-92045-2322https://doaj.org/article/e2dfee02ff824099b1ee359adaca24342021-01-01T00:00:00Zhttps://doi.org/10.1038/s41598-021-81668-9https://doaj.org/toc/2045-2322Abstract The rumen microbiota comprises a community of microorganisms which specialise in the degradation of complex carbohydrates from plant-based feed. These microbes play a highly important role in ruminant nutrition and could also act as sources of industrially useful enzymes. In this study, we performed a metagenomic analysis of samples taken from the ruminal contents of cow (Bos Taurus), sheep (Ovis aries), reindeer (Rangifer tarandus) and red deer (Cervus elaphus). We constructed 391 metagenome-assembled genomes originating from 16 microbial phyla. We compared our genomes to other publically available microbial genomes and found that they contained 279 novel species. We also found significant differences between the microbiota of different ruminant species in terms of the abundance of microbial taxonomies, carbohydrate-active enzyme genes and KEGG orthologs. We present a dataset of rumen-derived genomes which in combination with other publicly-available rumen genomes can be used as a reference dataset in future metagenomic studies.Laura GlendinningBuğra GençR. John WallaceMick WatsonNature PortfolioarticleMedicineRScienceQENScientific Reports, Vol 11, Iss 1, Pp 1-10 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	Medicine R Science Q
spellingShingle	Medicine R Science Q Laura Glendinning Buğra Genç R. John Wallace Mick Watson Metagenomic analysis of the cow, sheep, reindeer and red deer rumen
description	Abstract The rumen microbiota comprises a community of microorganisms which specialise in the degradation of complex carbohydrates from plant-based feed. These microbes play a highly important role in ruminant nutrition and could also act as sources of industrially useful enzymes. In this study, we performed a metagenomic analysis of samples taken from the ruminal contents of cow (Bos Taurus), sheep (Ovis aries), reindeer (Rangifer tarandus) and red deer (Cervus elaphus). We constructed 391 metagenome-assembled genomes originating from 16 microbial phyla. We compared our genomes to other publically available microbial genomes and found that they contained 279 novel species. We also found significant differences between the microbiota of different ruminant species in terms of the abundance of microbial taxonomies, carbohydrate-active enzyme genes and KEGG orthologs. We present a dataset of rumen-derived genomes which in combination with other publicly-available rumen genomes can be used as a reference dataset in future metagenomic studies.
format	article
author	Laura Glendinning Buğra Genç R. John Wallace Mick Watson
author_facet	Laura Glendinning Buğra Genç R. John Wallace Mick Watson
author_sort	Laura Glendinning
title	Metagenomic analysis of the cow, sheep, reindeer and red deer rumen
title_short	Metagenomic analysis of the cow, sheep, reindeer and red deer rumen
title_full	Metagenomic analysis of the cow, sheep, reindeer and red deer rumen
title_fullStr	Metagenomic analysis of the cow, sheep, reindeer and red deer rumen
title_full_unstemmed	Metagenomic analysis of the cow, sheep, reindeer and red deer rumen
title_sort	metagenomic analysis of the cow, sheep, reindeer and red deer rumen
publisher	Nature Portfolio
publishDate	2021
url	https://doaj.org/article/e2dfee02ff824099b1ee359adaca2434
work_keys_str_mv	AT lauraglendinning metagenomicanalysisofthecowsheepreindeerandreddeerrumen AT bugragenc metagenomicanalysisofthecowsheepreindeerandreddeerrumen AT rjohnwallace metagenomicanalysisofthecowsheepreindeerandreddeerrumen AT mickwatson metagenomicanalysisofthecowsheepreindeerandreddeerrumen
_version_	1718392353349173248

Metagenomic analysis of the cow, sheep, reindeer and red deer rumen

Ejemplares similares