Manure Microbial Communities and Resistance Profiles Reconfigure after Transition to Manure Pits and Differ from Those in Fertilized Field Soil

The addition of dairy cow manure—stored in manure pits—to field soil has the potential to introduce not only organic nutrients but also mammalian microbial communities and antimicrobial resistance genes (ARGs) to soil communities. Using shotgun sequencing paired with functional metagenomics, we sho...

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Autores principales:	Kimberley V. Sukhum, Rhiannon C. Vargas, Manish Boolchandani, Alaric W. D’Souza, Sanket Patel, Akhil Kesaraju, Gretchen Walljasper, Harshad Hegde, Zhan Ye, Robert K. Valenzuela, Paul Gunderson, Casper Bendixsen, Gautam Dantas, Sanjay K. Shukla
Formato:	article
Lenguaje:	EN
Publicado:	American Society for Microbiology 2021
Materias:	Microbiology QR1-502
Acceso en línea:	https://doaj.org/article/e3434897ff2d43b1a06c864fcfe0ff69
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spelling	oai:doaj.org-article:e3434897ff2d43b1a06c864fcfe0ff692021-11-03T21:15:03ZManure Microbial Communities and Resistance Profiles Reconfigure after Transition to Manure Pits and Differ from Those in Fertilized Field Soil2150-751110.1128/mBio.00798-21https://doaj.org/article/e3434897ff2d43b1a06c864fcfe0ff692021-06-01T00:00:00Zhttps://journals.asm.org/doi/10.1128/mBio.00798-21https://doaj.org/toc/2150-7511 The addition of dairy cow manure—stored in manure pits—to field soil has the potential to introduce not only organic nutrients but also mammalian microbial communities and antimicrobial resistance genes (ARGs) to soil communities. Using shotgun sequencing paired with functional metagenomics, we showed that microbial community composition changed between fresh manure and manure pit samples with a decrease in gut-associated pathobionts, while ARG abundance and diversity remained high.Kimberley V. SukhumRhiannon C. VargasManish BoolchandaniAlaric W. D’SouzaSanket PatelAkhil KesarajuGretchen WalljasperHarshad HegdeZhan YeRobert K. ValenzuelaPaul GundersonCasper BendixsenGautam DantasSanjay K. ShuklaAmerican Society for MicrobiologyarticleMicrobiologyQR1-502ENmBio, Vol 12, Iss 3 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	Microbiology QR1-502
spellingShingle	Microbiology QR1-502 Kimberley V. Sukhum Rhiannon C. Vargas Manish Boolchandani Alaric W. D’Souza Sanket Patel Akhil Kesaraju Gretchen Walljasper Harshad Hegde Zhan Ye Robert K. Valenzuela Paul Gunderson Casper Bendixsen Gautam Dantas Sanjay K. Shukla Manure Microbial Communities and Resistance Profiles Reconfigure after Transition to Manure Pits and Differ from Those in Fertilized Field Soil
description	The addition of dairy cow manure—stored in manure pits—to field soil has the potential to introduce not only organic nutrients but also mammalian microbial communities and antimicrobial resistance genes (ARGs) to soil communities. Using shotgun sequencing paired with functional metagenomics, we showed that microbial community composition changed between fresh manure and manure pit samples with a decrease in gut-associated pathobionts, while ARG abundance and diversity remained high.
format	article
author	Kimberley V. Sukhum Rhiannon C. Vargas Manish Boolchandani Alaric W. D’Souza Sanket Patel Akhil Kesaraju Gretchen Walljasper Harshad Hegde Zhan Ye Robert K. Valenzuela Paul Gunderson Casper Bendixsen Gautam Dantas Sanjay K. Shukla
author_facet	Kimberley V. Sukhum Rhiannon C. Vargas Manish Boolchandani Alaric W. D’Souza Sanket Patel Akhil Kesaraju Gretchen Walljasper Harshad Hegde Zhan Ye Robert K. Valenzuela Paul Gunderson Casper Bendixsen Gautam Dantas Sanjay K. Shukla
author_sort	Kimberley V. Sukhum
title	Manure Microbial Communities and Resistance Profiles Reconfigure after Transition to Manure Pits and Differ from Those in Fertilized Field Soil
title_short	Manure Microbial Communities and Resistance Profiles Reconfigure after Transition to Manure Pits and Differ from Those in Fertilized Field Soil
title_full	Manure Microbial Communities and Resistance Profiles Reconfigure after Transition to Manure Pits and Differ from Those in Fertilized Field Soil
title_fullStr	Manure Microbial Communities and Resistance Profiles Reconfigure after Transition to Manure Pits and Differ from Those in Fertilized Field Soil
title_full_unstemmed	Manure Microbial Communities and Resistance Profiles Reconfigure after Transition to Manure Pits and Differ from Those in Fertilized Field Soil
title_sort	manure microbial communities and resistance profiles reconfigure after transition to manure pits and differ from those in fertilized field soil
publisher	American Society for Microbiology
publishDate	2021
url	https://doaj.org/article/e3434897ff2d43b1a06c864fcfe0ff69
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Manure Microbial Communities and Resistance Profiles Reconfigure after Transition to Manure Pits and Differ from Those in Fertilized Field Soil

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