Characteristic of Tobacco mosaic virus isolated from cucumber and tobacco collected from East Java, Indonesia

Abstract. Listihani, Hidayat SH, Wiyono S, Damayanti TA. 2019. Characteristic of Tobacco mosaic virus isolated from cucumber and tobacco collected from East Java, Indonesia. Biodiversitas 20: 2937-2942. Tobacco mosaic virus (TMV) is a newly emerging virus infecting cucumbers in Java, Indonesia. The...

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Autores principales:	LISTIHANI, SRI HENDRASTUTI HIDAYAT, SURYO WIYONO, Tri Asmira Damayanti
Formato:	article
Lenguaje:	EN
Publicado:	MBI & UNS Solo 2019
Materias:	cucurbitaceae, diagnosis, diversity, tobamovirus Biology (General) QH301-705.5
Acceso en línea:	https://doaj.org/article/e3f78610d63a436dbf53c91db8f7b0bf
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spelling	oai:doaj.org-article:e3f78610d63a436dbf53c91db8f7b0bf2021-11-21T21:54:58ZCharacteristic of Tobacco mosaic virus isolated from cucumber and tobacco collected from East Java, Indonesia1412-033X2085-472210.13057/biodiv/d201023https://doaj.org/article/e3f78610d63a436dbf53c91db8f7b0bf2019-09-01T00:00:00Zhttps://smujo.id/biodiv/article/view/4202https://doaj.org/toc/1412-033Xhttps://doaj.org/toc/2085-4722Abstract. Listihani, Hidayat SH, Wiyono S, Damayanti TA. 2019. Characteristic of Tobacco mosaic virus isolated from cucumber and tobacco collected from East Java, Indonesia. Biodiversitas 20: 2937-2942. Tobacco mosaic virus (TMV) is a newly emerging virus infecting cucumbers in Java, Indonesia. The basic characters of the TMV isolated from cucumber need further study to investigate its differences with that from tobacco. Thus, the research aimed to study the character of both isolates based on their biological, symptomatology and nucleic acid of coat protein (CP) gene properties. The TMV isolates from both cucumber and tobacco were able to infect similar indicator plants with differing symptom expressions, especially on eggplant. Homology of nucleotide and amino acid of coat protein gene among isolates were about 90.3% and 91.0%, and homology to other isolates was about 87.6 to 93.8% and 89.3 to 96.8%, respectively. There were 17 amino acid differences in the CP gene which is presumed to differentiate those two isolates. Phylogenetic analysis CP gene sequences compared with corresponding isolates in GenBank showed the two isolates separated in different clades. The cucumber isolate from Kediri is closely related to tomato isolate from China in clade I, while tobacco isolate from Jember closely related to tobacco isolate from China in clade IIindicating the existence of two differ TMV variants. It will increase the difficulty to manage TMV in the fields.LISTIHANISRI HENDRASTUTI HIDAYATSURYO WIYONOTri Asmira DamayantiMBI & UNS Soloarticlecucurbitaceae, diagnosis, diversity, tobamovirusBiology (General)QH301-705.5ENBiodiversitas, Vol 20, Iss 10 (2019)
institution	DOAJ
collection	DOAJ
language	EN
topic	cucurbitaceae, diagnosis, diversity, tobamovirus Biology (General) QH301-705.5
spellingShingle	cucurbitaceae, diagnosis, diversity, tobamovirus Biology (General) QH301-705.5 LISTIHANI SRI HENDRASTUTI HIDAYAT SURYO WIYONO Tri Asmira Damayanti Characteristic of Tobacco mosaic virus isolated from cucumber and tobacco collected from East Java, Indonesia
description	Abstract. Listihani, Hidayat SH, Wiyono S, Damayanti TA. 2019. Characteristic of Tobacco mosaic virus isolated from cucumber and tobacco collected from East Java, Indonesia. Biodiversitas 20: 2937-2942. Tobacco mosaic virus (TMV) is a newly emerging virus infecting cucumbers in Java, Indonesia. The basic characters of the TMV isolated from cucumber need further study to investigate its differences with that from tobacco. Thus, the research aimed to study the character of both isolates based on their biological, symptomatology and nucleic acid of coat protein (CP) gene properties. The TMV isolates from both cucumber and tobacco were able to infect similar indicator plants with differing symptom expressions, especially on eggplant. Homology of nucleotide and amino acid of coat protein gene among isolates were about 90.3% and 91.0%, and homology to other isolates was about 87.6 to 93.8% and 89.3 to 96.8%, respectively. There were 17 amino acid differences in the CP gene which is presumed to differentiate those two isolates. Phylogenetic analysis CP gene sequences compared with corresponding isolates in GenBank showed the two isolates separated in different clades. The cucumber isolate from Kediri is closely related to tomato isolate from China in clade I, while tobacco isolate from Jember closely related to tobacco isolate from China in clade IIindicating the existence of two differ TMV variants. It will increase the difficulty to manage TMV in the fields.
format	article
author	LISTIHANI SRI HENDRASTUTI HIDAYAT SURYO WIYONO Tri Asmira Damayanti
author_facet	LISTIHANI SRI HENDRASTUTI HIDAYAT SURYO WIYONO Tri Asmira Damayanti
author_sort	LISTIHANI
title	Characteristic of Tobacco mosaic virus isolated from cucumber and tobacco collected from East Java, Indonesia
title_short	Characteristic of Tobacco mosaic virus isolated from cucumber and tobacco collected from East Java, Indonesia
title_full	Characteristic of Tobacco mosaic virus isolated from cucumber and tobacco collected from East Java, Indonesia
title_fullStr	Characteristic of Tobacco mosaic virus isolated from cucumber and tobacco collected from East Java, Indonesia
title_full_unstemmed	Characteristic of Tobacco mosaic virus isolated from cucumber and tobacco collected from East Java, Indonesia
title_sort	characteristic of tobacco mosaic virus isolated from cucumber and tobacco collected from east java, indonesia
publisher	MBI & UNS Solo
publishDate	2019
url	https://doaj.org/article/e3f78610d63a436dbf53c91db8f7b0bf
work_keys_str_mv	AT listihani characteristicoftobaccomosaicvirusisolatedfromcucumberandtobaccocollectedfromeastjavaindonesia AT srihendrastutihidayat characteristicoftobaccomosaicvirusisolatedfromcucumberandtobaccocollectedfromeastjavaindonesia AT suryowiyono characteristicoftobaccomosaicvirusisolatedfromcucumberandtobaccocollectedfromeastjavaindonesia AT triasmiradamayanti characteristicoftobaccomosaicvirusisolatedfromcucumberandtobaccocollectedfromeastjavaindonesia
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Characteristic of Tobacco mosaic virus isolated from cucumber and tobacco collected from East Java, Indonesia

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