De novo chromosome-length assembly of the mule deer (Odocoileus hemionus) genome

The mule deer (Odocoileus hemionus) is an ungulate species that is distributed in a range from western Canada to central Mexico. Mule deer are an essential source of food for many predators, are relatively abundant, and commonly make broad migration movements. A clearer understanding of...

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Autores principales:	Sydney Lamb, Adam M. Taylor, Tabitha A. Hughes, Brock R. McMillan, Randy T. Larsen, Ruqayya Khan, David Weisz, Olga Dudchenko, Erez Lieberman Aiden, Nathaniel B. Edelman, Paul B. Frandsen
Formato:	article
Lenguaje:	EN
Publicado:	GigaScience Press 2021
Materias:	Electronic computers. Computer science QA75.5-76.95
Acceso en línea:	https://doaj.org/article/e4376bbf8ec34e569cd4922773e805f4
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spelling	oai:doaj.org-article:e4376bbf8ec34e569cd4922773e805f42021-11-22T09:06:47Z De novo chromosome-length assembly of the mule deer (Odocoileus hemionus) genome10.46471/gigabyte.342709-4715https://doaj.org/article/e4376bbf8ec34e569cd4922773e805f42021-11-01T00:00:00Zhttps://gigabytejournal.com/articles/34https://doaj.org/toc/2709-4715 The mule deer (Odocoileus hemionus) is an ungulate species that is distributed in a range from western Canada to central Mexico. Mule deer are an essential source of food for many predators, are relatively abundant, and commonly make broad migration movements. A clearer understanding of the mule deer genome can improve our knowledge of its population genetics, movements, and demographic history, aiding in conservation efforts. Their large population size, continuous distribution, and diversity of habitat make mule deer excellent candidates for population genomics studies; however, few genomic resources are currently available for this species. Here, we sequence and assemble the mule deer genome into a highly contiguous chromosome-length assembly for use in future research using long-read sequencing and Hi-C technologies. We also provide a genome annotation and compare demographic histories of the mule deer and white-tailed deer using the pairwise sequentially Markovian coalescent model. We expect this assembly to be a valuable resource in the continued study and conservation of mule deer. Sydney LambAdam M. TaylorTabitha A. HughesBrock R. McMillanRandy T. LarsenRuqayya KhanDavid WeiszOlga DudchenkoErez Lieberman AidenNathaniel B. EdelmanPaul B. FrandsenGigaScience PressarticleElectronic computers. Computer scienceQA75.5-76.95ENGigaByte (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	Electronic computers. Computer science QA75.5-76.95
spellingShingle	Electronic computers. Computer science QA75.5-76.95 Sydney Lamb Adam M. Taylor Tabitha A. Hughes Brock R. McMillan Randy T. Larsen Ruqayya Khan David Weisz Olga Dudchenko Erez Lieberman Aiden Nathaniel B. Edelman Paul B. Frandsen De novo chromosome-length assembly of the mule deer (Odocoileus hemionus) genome
description	The mule deer (Odocoileus hemionus) is an ungulate species that is distributed in a range from western Canada to central Mexico. Mule deer are an essential source of food for many predators, are relatively abundant, and commonly make broad migration movements. A clearer understanding of the mule deer genome can improve our knowledge of its population genetics, movements, and demographic history, aiding in conservation efforts. Their large population size, continuous distribution, and diversity of habitat make mule deer excellent candidates for population genomics studies; however, few genomic resources are currently available for this species. Here, we sequence and assemble the mule deer genome into a highly contiguous chromosome-length assembly for use in future research using long-read sequencing and Hi-C technologies. We also provide a genome annotation and compare demographic histories of the mule deer and white-tailed deer using the pairwise sequentially Markovian coalescent model. We expect this assembly to be a valuable resource in the continued study and conservation of mule deer.
format	article
author	Sydney Lamb Adam M. Taylor Tabitha A. Hughes Brock R. McMillan Randy T. Larsen Ruqayya Khan David Weisz Olga Dudchenko Erez Lieberman Aiden Nathaniel B. Edelman Paul B. Frandsen
author_facet	Sydney Lamb Adam M. Taylor Tabitha A. Hughes Brock R. McMillan Randy T. Larsen Ruqayya Khan David Weisz Olga Dudchenko Erez Lieberman Aiden Nathaniel B. Edelman Paul B. Frandsen
author_sort	Sydney Lamb
title	De novo chromosome-length assembly of the mule deer (Odocoileus hemionus) genome
title_short	De novo chromosome-length assembly of the mule deer (Odocoileus hemionus) genome
title_full	De novo chromosome-length assembly of the mule deer (Odocoileus hemionus) genome
title_fullStr	De novo chromosome-length assembly of the mule deer (Odocoileus hemionus) genome
title_full_unstemmed	De novo chromosome-length assembly of the mule deer (Odocoileus hemionus) genome
title_sort	de novo chromosome-length assembly of the mule deer (odocoileus hemionus) genome
publisher	GigaScience Press
publishDate	2021
url	https://doaj.org/article/e4376bbf8ec34e569cd4922773e805f4
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De novo chromosome-length assembly of the mule deer (Odocoileus hemionus) genome

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