Expression profile in rice panicle: insights into heat response mechanism at reproductive stage.

Rice at reproductive stage is more sensitive to environmental changes, and little is known about the mechanism of heat response in rice panicle. Here, using rice microarray, we provided a time course gene expression profile of rice panicle at anther developmental stage 8 after 40°C treatment for 0 m...

Descripción completa

Guardado en:

Detalles Bibliográficos
Autores principales:	Xianwen Zhang, Jiaping Li, Ailing Liu, Jie Zou, Xiaoyun Zhou, Jianhua Xiang, Wirat Rerksiri, Yan Peng, Xingyao Xiong, Xinbo Chen
Formato:	article
Lenguaje:	EN
Publicado:	Public Library of Science (PLoS) 2012
Materias:	Medicine R Science Q
Acceso en línea:	https://doaj.org/article/e4a2a2252d6c4ad49b8b5f8bdacc1b3e
Etiquetas:	Agregar Etiqueta Sin Etiquetas, Sea el primero en etiquetar este registro!

id	oai:doaj.org-article:e4a2a2252d6c4ad49b8b5f8bdacc1b3e
record_format	dspace
spelling	oai:doaj.org-article:e4a2a2252d6c4ad49b8b5f8bdacc1b3e2021-11-18T08:08:47ZExpression profile in rice panicle: insights into heat response mechanism at reproductive stage.1932-620310.1371/journal.pone.0049652https://doaj.org/article/e4a2a2252d6c4ad49b8b5f8bdacc1b3e2012-01-01T00:00:00Zhttps://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23155476/?tool=EBIhttps://doaj.org/toc/1932-6203Rice at reproductive stage is more sensitive to environmental changes, and little is known about the mechanism of heat response in rice panicle. Here, using rice microarray, we provided a time course gene expression profile of rice panicle at anther developmental stage 8 after 40°C treatment for 0 min, 20 min, 60 min, 2 h, 4 h, and 8 h. The identified differentially expressed genes were mainly involved in transcriptional regulation, transport, cellular homeostasis, and stress response. The predominant transcription factor gene families responsive to heat stress were Hsf, NAC, AP2/ERF, WRKY, MYB, and C(2)H(2). KMC analysis discovered the time-dependent gene expression pattern under heat stress. The motif co-occurrence analysis on the promoters of genes from an early up-regulated cluster showed the important roles of GCC box, HSE, ABRE, and CE3 in response to heat stress. The regulation model central to ROS combined with transcriptome and ROS quantification data in rice panicle indicated the great importance to maintain ROS balance and the existence of wide cross-talk in heat response. The present study increased our understanding of the heat response in rice panicle and provided good candidate genes for crop improvement.Xianwen ZhangJiaping LiAiling LiuJie ZouXiaoyun ZhouJianhua XiangWirat RerksiriYan PengXingyao XiongXinbo ChenPublic Library of Science (PLoS)articleMedicineRScienceQENPLoS ONE, Vol 7, Iss 11, p e49652 (2012)
institution	DOAJ
collection	DOAJ
language	EN
topic	Medicine R Science Q
spellingShingle	Medicine R Science Q Xianwen Zhang Jiaping Li Ailing Liu Jie Zou Xiaoyun Zhou Jianhua Xiang Wirat Rerksiri Yan Peng Xingyao Xiong Xinbo Chen Expression profile in rice panicle: insights into heat response mechanism at reproductive stage.
description	Rice at reproductive stage is more sensitive to environmental changes, and little is known about the mechanism of heat response in rice panicle. Here, using rice microarray, we provided a time course gene expression profile of rice panicle at anther developmental stage 8 after 40°C treatment for 0 min, 20 min, 60 min, 2 h, 4 h, and 8 h. The identified differentially expressed genes were mainly involved in transcriptional regulation, transport, cellular homeostasis, and stress response. The predominant transcription factor gene families responsive to heat stress were Hsf, NAC, AP2/ERF, WRKY, MYB, and C(2)H(2). KMC analysis discovered the time-dependent gene expression pattern under heat stress. The motif co-occurrence analysis on the promoters of genes from an early up-regulated cluster showed the important roles of GCC box, HSE, ABRE, and CE3 in response to heat stress. The regulation model central to ROS combined with transcriptome and ROS quantification data in rice panicle indicated the great importance to maintain ROS balance and the existence of wide cross-talk in heat response. The present study increased our understanding of the heat response in rice panicle and provided good candidate genes for crop improvement.
format	article
author	Xianwen Zhang Jiaping Li Ailing Liu Jie Zou Xiaoyun Zhou Jianhua Xiang Wirat Rerksiri Yan Peng Xingyao Xiong Xinbo Chen
author_facet	Xianwen Zhang Jiaping Li Ailing Liu Jie Zou Xiaoyun Zhou Jianhua Xiang Wirat Rerksiri Yan Peng Xingyao Xiong Xinbo Chen
author_sort	Xianwen Zhang
title	Expression profile in rice panicle: insights into heat response mechanism at reproductive stage.
title_short	Expression profile in rice panicle: insights into heat response mechanism at reproductive stage.
title_full	Expression profile in rice panicle: insights into heat response mechanism at reproductive stage.
title_fullStr	Expression profile in rice panicle: insights into heat response mechanism at reproductive stage.
title_full_unstemmed	Expression profile in rice panicle: insights into heat response mechanism at reproductive stage.
title_sort	expression profile in rice panicle: insights into heat response mechanism at reproductive stage.
publisher	Public Library of Science (PLoS)
publishDate	2012
url	https://doaj.org/article/e4a2a2252d6c4ad49b8b5f8bdacc1b3e
work_keys_str_mv	AT xianwenzhang expressionprofileinricepanicleinsightsintoheatresponsemechanismatreproductivestage AT jiapingli expressionprofileinricepanicleinsightsintoheatresponsemechanismatreproductivestage AT ailingliu expressionprofileinricepanicleinsightsintoheatresponsemechanismatreproductivestage AT jiezou expressionprofileinricepanicleinsightsintoheatresponsemechanismatreproductivestage AT xiaoyunzhou expressionprofileinricepanicleinsightsintoheatresponsemechanismatreproductivestage AT jianhuaxiang expressionprofileinricepanicleinsightsintoheatresponsemechanismatreproductivestage AT wiratrerksiri expressionprofileinricepanicleinsightsintoheatresponsemechanismatreproductivestage AT yanpeng expressionprofileinricepanicleinsightsintoheatresponsemechanismatreproductivestage AT xingyaoxiong expressionprofileinricepanicleinsightsintoheatresponsemechanismatreproductivestage AT xinbochen expressionprofileinricepanicleinsightsintoheatresponsemechanismatreproductivestage
_version_	1718422201974128640

Expression profile in rice panicle: insights into heat response mechanism at reproductive stage.

Ejemplares similares