Automated optimized parameters for T-distributed stochastic neighbor embedding improve visualization and analysis of large datasets
Visualisation tools that use dimensionality reduction, such as t-SNE, provide poor visualisation on large data sets of millions of observations. Here the authors present opt-SNE, that automatically finds data set-tailored parameters for t-SNE to optimise visualisation and improve analysis.
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Nature Portfolio
2019
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oai:doaj.org-article:e5126a248205487bb5a7c54c11c0bcc32021-12-02T15:35:57ZAutomated optimized parameters for T-distributed stochastic neighbor embedding improve visualization and analysis of large datasets10.1038/s41467-019-13055-y2041-1723https://doaj.org/article/e5126a248205487bb5a7c54c11c0bcc32019-11-01T00:00:00Zhttps://doi.org/10.1038/s41467-019-13055-yhttps://doaj.org/toc/2041-1723Visualisation tools that use dimensionality reduction, such as t-SNE, provide poor visualisation on large data sets of millions of observations. Here the authors present opt-SNE, that automatically finds data set-tailored parameters for t-SNE to optimise visualisation and improve analysis.Anna C. BelkinaChristopher O. CiccolellaRina AnnoRichard HalpertJosef SpidlenJennifer E. Snyder-CappioneNature PortfolioarticleScienceQENNature Communications, Vol 10, Iss 1, Pp 1-12 (2019) |
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Science Q Anna C. Belkina Christopher O. Ciccolella Rina Anno Richard Halpert Josef Spidlen Jennifer E. Snyder-Cappione Automated optimized parameters for T-distributed stochastic neighbor embedding improve visualization and analysis of large datasets |
description |
Visualisation tools that use dimensionality reduction, such as t-SNE, provide poor visualisation on large data sets of millions of observations. Here the authors present opt-SNE, that automatically finds data set-tailored parameters for t-SNE to optimise visualisation and improve analysis. |
format |
article |
author |
Anna C. Belkina Christopher O. Ciccolella Rina Anno Richard Halpert Josef Spidlen Jennifer E. Snyder-Cappione |
author_facet |
Anna C. Belkina Christopher O. Ciccolella Rina Anno Richard Halpert Josef Spidlen Jennifer E. Snyder-Cappione |
author_sort |
Anna C. Belkina |
title |
Automated optimized parameters for T-distributed stochastic neighbor embedding improve visualization and analysis of large datasets |
title_short |
Automated optimized parameters for T-distributed stochastic neighbor embedding improve visualization and analysis of large datasets |
title_full |
Automated optimized parameters for T-distributed stochastic neighbor embedding improve visualization and analysis of large datasets |
title_fullStr |
Automated optimized parameters for T-distributed stochastic neighbor embedding improve visualization and analysis of large datasets |
title_full_unstemmed |
Automated optimized parameters for T-distributed stochastic neighbor embedding improve visualization and analysis of large datasets |
title_sort |
automated optimized parameters for t-distributed stochastic neighbor embedding improve visualization and analysis of large datasets |
publisher |
Nature Portfolio |
publishDate |
2019 |
url |
https://doaj.org/article/e5126a248205487bb5a7c54c11c0bcc3 |
work_keys_str_mv |
AT annacbelkina automatedoptimizedparametersfortdistributedstochasticneighborembeddingimprovevisualizationandanalysisoflargedatasets AT christopherociccolella automatedoptimizedparametersfortdistributedstochasticneighborembeddingimprovevisualizationandanalysisoflargedatasets AT rinaanno automatedoptimizedparametersfortdistributedstochasticneighborembeddingimprovevisualizationandanalysisoflargedatasets AT richardhalpert automatedoptimizedparametersfortdistributedstochasticneighborembeddingimprovevisualizationandanalysisoflargedatasets AT josefspidlen automatedoptimizedparametersfortdistributedstochasticneighborembeddingimprovevisualizationandanalysisoflargedatasets AT jenniferesnydercappione automatedoptimizedparametersfortdistributedstochasticneighborembeddingimprovevisualizationandanalysisoflargedatasets |
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1718386447093858304 |