Comparison of metabolic states using genome-scale metabolic models

Código QR

Comparison of metabolic states using genome-scale metabolic models

Mostrar otras versiones (1)

Genome-scale metabolic models (GEMs) are comprehensive knowledge bases of cellular metabolism and serve as mathematical tools for studying biological phenotypes and metabolic states or conditions in various organisms and cell types. Given the sheer size and complexity of human metabolism, selecting...

Descripción completa

Guardado en:

Detalles Bibliográficos
Autores principales:	Chaitra Sarathy, Marian Breuer, Martina Kutmon, Michiel E. Adriaens, Chris T. Evelo, Ilja C. W. Arts
Formato:	article
Lenguaje:	EN
Publicado:	Public Library of Science (PLoS) 2021
Materias:	Biology (General) QH301-705.5
Acceso en línea:	https://doaj.org/article/e5d3f15d2ea54ac28d9d86e2195eceb9
Etiquetas:	Agregar Etiqueta Sin Etiquetas, Sea el primero en etiquetar este registro!

Ejemplares similares

Comparison of metabolic states using genome-scale metabolic models.
por: Chaitra Sarathy, et al.
Publicado: (2021)

Bayesian genome scale modelling identifies thermal determinants of yeast metabolism
por: Gang Li, et al.
Publicado: (2021)

AI delivers Michaelis constants as fuel for genome-scale metabolic models.
por: Albert A Antolin, et al.
Publicado: (2021)

ΔFBA-Predicting metabolic flux alterations using genome-scale metabolic models and differential transcriptomic data.
por: Sudharshan Ravi, et al.
Publicado: (2021)

Genome‐scale metabolic modeling reveals SARS‐CoV‐2‐induced metabolic changes and antiviral targets
por: Kuoyuan Cheng, et al.
Publicado: (2021)

Microbial carbon use efficiency predicted from genome-scale metabolic models
por: Mustafa Saifuddin, et al.
Publicado: (2019)

Predicting growth of the healthy infant using a genome scale metabolic model
por: Avlant Nilsson, et al.
Publicado: (2017)

Experimentally Validated Reconstruction and Analysis of a Genome-Scale Metabolic Model of an Anaerobic Neocallimastigomycota Fungus
por: St. Elmo Wilken, et al.
Publicado: (2021)

Computational analysis of reciprocal association of metabolism and epigenetics in the budding yeast: a genome-scale metabolic model (GSMM) approach.
por: Ali Salehzadeh-Yazdi, et al.
Publicado: (2014)

Genome-Scale Metabolic Model of <i>Caldicellulosiruptor bescii</i> Reveals Optimal Metabolic Engineering Strategies for Bio-based Chemical Production
por: Ke Zhang, et al.
Publicado: (2021)

Robust Analysis of Fluxes in Genome-Scale Metabolic Pathways
por: Michael MacGillivray, et al.
Publicado: (2017)

Genome-scale metabolic reconstructions of multiple Salmonella strains reveal serovar-specific metabolic traits
por: Yara Seif, et al.
Publicado: (2018)

IMGMD: A platform for the integration and standardisation of In silico Microbial Genome-scale Metabolic Models
por: Chao Ye, et al.
Publicado: (2017)

Genome-scale metabolic modeling elucidates the role of proliferative adaptation in causing the Warburg effect.
por: Tomer Shlomi, et al.
Publicado: (2011)

Analysis of human metabolism by reducing the complexity of the genome-scale models using redHUMAN
por: Maria Masid, et al.
Publicado: (2020)

Curating and comparing 114 strain-specific genome-scale metabolic models of Staphylococcus aureus
por: Alina Renz, et al.
Publicado: (2021)

A genome-scale metabolic model of Saccharomyces cerevisiae that integrates expression constraints and reaction thermodynamics
por: Omid Oftadeh, et al.
Publicado: (2021)

Computer-Aided Design for Identifying Anticancer Targets in Genome-Scale Metabolic Models of Colon Cancer
por: Chao-Ting Cheng, et al.
Publicado: (2021)

The RAVEN toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum.
por: Rasmus Agren, et al.
Publicado: (2013)

CyTargetLinker: a cytoscape app to integrate regulatory interactions in network analysis.
por: Martina Kutmon, et al.
Publicado: (2013)

Genome-Scale Metabolic Models and Machine Learning Reveal Genetic Determinants of Antibiotic Resistance in Escherichia coli and Unravel the Underlying Metabolic Adaptation Mechanisms
por: Nicole Pearcy, et al.
Publicado: (2021)

Genome-Scale Investigation of the Metabolic Determinants Generating Bacterial Fastidious Growth
por: Léo Gerlin, et al.
Publicado: (2020)

Metabolic Responses to Polymyxin Treatment in <italic toggle="yes">Acinetobacter baumannii</italic> ATCC 19606: Integrating Transcriptomics and Metabolomics with Genome-Scale Metabolic Modeling
por: Yan Zhu, et al.
Publicado: (2019)

Genome-scale reconstruction of Paenarthrobacter aurescens TC1 metabolic model towards the study of atrazine bioremediation
por: Shany Ofaim, et al.
Publicado: (2020)

Author Correction: Analysis of human metabolism by reducing the complexity of the genome-scale models using redHUMAN
por: Maria Masid, et al.
Publicado: (2020)

Exploring gene knockout strategies to identify potential drug targets using genome-scale metabolic models
por: Abhijit Paul, et al.
Publicado: (2021)

Integration of machine learning and genome-scale metabolic modeling identifies multi-omics biomarkers for radiation resistance
por: Joshua E. Lewis, et al.
Publicado: (2021)

Comparative genome-scale reconstruction of gapless metabolic networks for present and ancestral species.
por: Esa Pitkänen, et al.
Publicado: (2014)

An updated genome-scale metabolic network reconstruction of Pseudomonas aeruginosa PA14 to characterize mucin-driven shifts in bacterial metabolism
por: Dawson D. Payne, et al.
Publicado: (2021)

Genome-scale metabolic network validation of Shewanella oneidensis using transposon insertion frequency analysis.
por: Hong Yang, et al.
Publicado: (2014)

MICOM: Metagenome-Scale Modeling To Infer Metabolic Interactions in the Gut Microbiota
por: Christian Diener, et al.
Publicado: (2020)

A Genome-Scale Model of <italic toggle="yes">Shewanella piezotolerans</italic> Simulates Mechanisms of Metabolic Diversity and Energy Conservation
por: Keith Dufault-Thompson, et al.
Publicado: (2017)

Integration of a physiologically-based pharmacokinetic model with a whole-body, organ-resolved genome-scale model for characterization of ethanol and acetaldehyde metabolism.
por: Leo Zhu, et al.
Publicado: (2021)

Reconstruction of a Genome-scale Metabolic Network of Komagataeibacter nataicola RZS01 for Cellulose Production
por: Heng Zhang, et al.
Publicado: (2017)

Genome-scale reconstructions of the mammalian secretory pathway predict metabolic costs and limitations of protein secretion
por: Jahir M. Gutierrez, et al.
Publicado: (2020)

A resource to explore the discovery of rare diseases and their causative genes
por: Friederike Ehrhart, et al.
Publicado: (2021)

Secondary Metabolism in the Gill Microbiota of Shipworms (Teredinidae) as Revealed by Comparison of Metagenomes and Nearly Complete Symbiont Genomes
por: Marvin A. Altamia, et al.
Publicado: (2020)

A genome-scale Escherichia coli kinetic metabolic model k-ecoli457 satisfying flux data for multiple mutant strains
por: Ali Khodayari, et al.
Publicado: (2016)

Genome-scale metabolic reconstruction of the symbiosis between a leguminous plant and a nitrogen-fixing bacterium
por: George C. diCenzo, et al.
Publicado: (2020)

A genome‐scale TF–DNA interaction network of transcriptional regulation of Arabidopsis primary and specialized metabolism
por: Michelle Tang, et al.
Publicado: (2021)