Discovery of rare cells from voluminous single cell expression data

Algorithms designed to find rare cells in single cell RNA-seq data sets cannot cope with data sets containing tens of thousands of cells. Here the authors present Finder of Rare Entities (FiRE), an algorithm that uses the Sketching technique to assign a rareness score to every expression profile in...

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Autores principales:	Aashi Jindal, Prashant Gupta, Jayadeva, Debarka Sengupta
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2018
Materias:	Science Q
Acceso en línea:	https://doaj.org/article/e5f61881b96d473a964962f81525ffb9
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spelling	oai:doaj.org-article:e5f61881b96d473a964962f81525ffb92021-12-02T17:32:47ZDiscovery of rare cells from voluminous single cell expression data10.1038/s41467-018-07234-62041-1723https://doaj.org/article/e5f61881b96d473a964962f81525ffb92018-11-01T00:00:00Zhttps://doi.org/10.1038/s41467-018-07234-6https://doaj.org/toc/2041-1723Algorithms designed to find rare cells in single cell RNA-seq data sets cannot cope with data sets containing tens of thousands of cells. Here the authors present Finder of Rare Entities (FiRE), an algorithm that uses the Sketching technique to assign a rareness score to every expression profile in large RNA-seq data sets.Aashi JindalPrashant GuptaJayadevaDebarka SenguptaNature PortfolioarticleScienceQENNature Communications, Vol 9, Iss 1, Pp 1-9 (2018)
institution	DOAJ
collection	DOAJ
language	EN
topic	Science Q
spellingShingle	Science Q Aashi Jindal Prashant Gupta Jayadeva Debarka Sengupta Discovery of rare cells from voluminous single cell expression data
description	Algorithms designed to find rare cells in single cell RNA-seq data sets cannot cope with data sets containing tens of thousands of cells. Here the authors present Finder of Rare Entities (FiRE), an algorithm that uses the Sketching technique to assign a rareness score to every expression profile in large RNA-seq data sets.
format	article
author	Aashi Jindal Prashant Gupta Jayadeva Debarka Sengupta
author_facet	Aashi Jindal Prashant Gupta Jayadeva Debarka Sengupta
author_sort	Aashi Jindal
title	Discovery of rare cells from voluminous single cell expression data
title_short	Discovery of rare cells from voluminous single cell expression data
title_full	Discovery of rare cells from voluminous single cell expression data
title_fullStr	Discovery of rare cells from voluminous single cell expression data
title_full_unstemmed	Discovery of rare cells from voluminous single cell expression data
title_sort	discovery of rare cells from voluminous single cell expression data
publisher	Nature Portfolio
publishDate	2018
url	https://doaj.org/article/e5f61881b96d473a964962f81525ffb9
work_keys_str_mv	AT aashijindal discoveryofrarecellsfromvoluminoussinglecellexpressiondata AT prashantgupta discoveryofrarecellsfromvoluminoussinglecellexpressiondata AT jayadeva discoveryofrarecellsfromvoluminoussinglecellexpressiondata AT debarkasengupta discoveryofrarecellsfromvoluminoussinglecellexpressiondata
_version_	1718380218795687936

Discovery of rare cells from voluminous single cell expression data

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