Genomic data of an environmental Escherichia coli isolate shows high resemblance to E. coli K-12 reference strain MG1655.

Escherichia coli species exhibits a high genomic diversification from evolution, mobile genetic elements and recombination. An environmental E. coli isolate, ‘JHI_5025’ from a crop trial appeared to be clonally related to the historical reference isolate E. coli K-12 strain ‘MG1655’, warranting furt...

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Autor principal:	Nicola Holden
Formato:	article
Lenguaje:	EN
Publicado:	Elsevier 2021
Materias:	Phylogenomics Clonality Whole genome alignment Whole genome sequencing Computer applications to medicine. Medical informatics R858-859.7 Science (General) Q1-390
Acceso en línea:	https://doaj.org/article/e627160477304a4db0275e36918dd10c
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spelling	oai:doaj.org-article:e627160477304a4db0275e36918dd10c2021-11-22T04:26:55ZGenomic data of an environmental Escherichia coli isolate shows high resemblance to E. coli K-12 reference strain MG1655.2352-340910.1016/j.dib.2021.107586https://doaj.org/article/e627160477304a4db0275e36918dd10c2021-12-01T00:00:00Zhttp://www.sciencedirect.com/science/article/pii/S2352340921008611https://doaj.org/toc/2352-3409Escherichia coli species exhibits a high genomic diversification from evolution, mobile genetic elements and recombination. An environmental E. coli isolate, ‘JHI_5025’ from a crop trial appeared to be clonally related to the historical reference isolate E. coli K-12 strain ‘MG1655’, warranting further genomic analysis. Their genomes share an average nucleotide identity of 99.74% and whole genome alignment showed little rearrangement of the JHI_5025 sequence compared to the reference. Five genomic islands not in the reference aligned to other sequences in the Enterobacteriaceae. Isolate JHI_5025 contained E. coli K-12 F plasmid sequence and at least one complete prophage sequence. The genome and comparison dataset provides utility of E. coli JHI_5025 as a representative contemporary genetic mimic of a well-known and much used workhorse strain.Nicola HoldenElsevierarticlePhylogenomicsClonalityWhole genome alignmentWhole genome sequencingComputer applications to medicine. Medical informaticsR858-859.7Science (General)Q1-390ENData in Brief, Vol 39, Iss , Pp 107586- (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	Phylogenomics Clonality Whole genome alignment Whole genome sequencing Computer applications to medicine. Medical informatics R858-859.7 Science (General) Q1-390
spellingShingle	Phylogenomics Clonality Whole genome alignment Whole genome sequencing Computer applications to medicine. Medical informatics R858-859.7 Science (General) Q1-390 Nicola Holden Genomic data of an environmental Escherichia coli isolate shows high resemblance to E. coli K-12 reference strain MG1655.
description	Escherichia coli species exhibits a high genomic diversification from evolution, mobile genetic elements and recombination. An environmental E. coli isolate, ‘JHI_5025’ from a crop trial appeared to be clonally related to the historical reference isolate E. coli K-12 strain ‘MG1655’, warranting further genomic analysis. Their genomes share an average nucleotide identity of 99.74% and whole genome alignment showed little rearrangement of the JHI_5025 sequence compared to the reference. Five genomic islands not in the reference aligned to other sequences in the Enterobacteriaceae. Isolate JHI_5025 contained E. coli K-12 F plasmid sequence and at least one complete prophage sequence. The genome and comparison dataset provides utility of E. coli JHI_5025 as a representative contemporary genetic mimic of a well-known and much used workhorse strain.
format	article
author	Nicola Holden
author_facet	Nicola Holden
author_sort	Nicola Holden
title	Genomic data of an environmental Escherichia coli isolate shows high resemblance to E. coli K-12 reference strain MG1655.
title_short	Genomic data of an environmental Escherichia coli isolate shows high resemblance to E. coli K-12 reference strain MG1655.
title_full	Genomic data of an environmental Escherichia coli isolate shows high resemblance to E. coli K-12 reference strain MG1655.
title_fullStr	Genomic data of an environmental Escherichia coli isolate shows high resemblance to E. coli K-12 reference strain MG1655.
title_full_unstemmed	Genomic data of an environmental Escherichia coli isolate shows high resemblance to E. coli K-12 reference strain MG1655.
title_sort	genomic data of an environmental escherichia coli isolate shows high resemblance to e. coli k-12 reference strain mg1655.
publisher	Elsevier
publishDate	2021
url	https://doaj.org/article/e627160477304a4db0275e36918dd10c
work_keys_str_mv	AT nicolaholden genomicdataofanenvironmentalescherichiacoliisolateshowshighresemblancetoecolik12referencestrainmg1655
_version_	1718418194670026752

Genomic data of an environmental Escherichia coli isolate shows high resemblance to E. coli K-12 reference strain MG1655.

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