Comparative Genome Analysis of Genes Regulating Compound Inflorescences in Tomato

Inflorescences are the main factor affecting fruit yield. The quantity and quality of inflorescences are closely related to fruit quality and yield. The presence of compound inflorescences in cherry tomatoes is well established, and it has been discovered by chance that compound racemes also exist i...

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Autores principales:	Yahui Yang, Huanhuan Yang, Yinxiao Tan, Tingting Zhao, Xiangyang Xu, Jingfu Li, Jingbin Jiang
Formato:	article
Lenguaje:	EN
Publicado:	MDPI AG 2021
Materias:	tomato compound inflorescence RNA-seq differentially expressed genes Biology (General) QH301-705.5 Chemistry QD1-999
Acceso en línea:	https://doaj.org/article/e6fccaf09d3e400f805c5f02b0b073a7
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spelling	oai:doaj.org-article:e6fccaf09d3e400f805c5f02b0b073a72021-11-25T17:57:41ZComparative Genome Analysis of Genes Regulating Compound Inflorescences in Tomato10.3390/ijms2222125481422-00671661-6596https://doaj.org/article/e6fccaf09d3e400f805c5f02b0b073a72021-11-01T00:00:00Zhttps://www.mdpi.com/1422-0067/22/22/12548https://doaj.org/toc/1661-6596https://doaj.org/toc/1422-0067Inflorescences are the main factor affecting fruit yield. The quantity and quality of inflorescences are closely related to fruit quality and yield. The presence of compound inflorescences in cherry tomatoes is well established, and it has been discovered by chance that compound racemes also exist in tomatoes. To explore the formation of compound inflorescences in tomato, transcriptome sequencing was performed on Moneymaker (MM) and Compound Inflorescence (CI) plants. In-florescences were collected in three periods (early, middle and late) in three replicates, for a total of 18 samples. Data analysis showed that the DEGs were most enriched in metabolic pathways and plant hormone signal transduction pathways. The DEGs were also enriched in the cell cycle pathway, photosynthesis pathway, carbon metabolism pathway and circadian rhythm pathway. We found that the <i>FALSIFLORA</i> (<i>FA</i>), <i>COMPOUND INFLORESCENCE</i> (<i>S</i>) and <i>ANANTHA</i> (<i>AN</i>) genes were involved in compound inflorescence development, not only revealing novel genes but also providing a rich theoretical basis for compound inflorescence development.Yahui YangHuanhuan YangYinxiao TanTingting ZhaoXiangyang XuJingfu LiJingbin JiangMDPI AGarticletomatocompound inflorescenceRNA-seqdifferentially expressed genesBiology (General)QH301-705.5ChemistryQD1-999ENInternational Journal of Molecular Sciences, Vol 22, Iss 12548, p 12548 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	tomato compound inflorescence RNA-seq differentially expressed genes Biology (General) QH301-705.5 Chemistry QD1-999
spellingShingle	tomato compound inflorescence RNA-seq differentially expressed genes Biology (General) QH301-705.5 Chemistry QD1-999 Yahui Yang Huanhuan Yang Yinxiao Tan Tingting Zhao Xiangyang Xu Jingfu Li Jingbin Jiang Comparative Genome Analysis of Genes Regulating Compound Inflorescences in Tomato
description	Inflorescences are the main factor affecting fruit yield. The quantity and quality of inflorescences are closely related to fruit quality and yield. The presence of compound inflorescences in cherry tomatoes is well established, and it has been discovered by chance that compound racemes also exist in tomatoes. To explore the formation of compound inflorescences in tomato, transcriptome sequencing was performed on Moneymaker (MM) and Compound Inflorescence (CI) plants. In-florescences were collected in three periods (early, middle and late) in three replicates, for a total of 18 samples. Data analysis showed that the DEGs were most enriched in metabolic pathways and plant hormone signal transduction pathways. The DEGs were also enriched in the cell cycle pathway, photosynthesis pathway, carbon metabolism pathway and circadian rhythm pathway. We found that the <i>FALSIFLORA</i> (<i>FA</i>), <i>COMPOUND INFLORESCENCE</i> (<i>S</i>) and <i>ANANTHA</i> (<i>AN</i>) genes were involved in compound inflorescence development, not only revealing novel genes but also providing a rich theoretical basis for compound inflorescence development.
format	article
author	Yahui Yang Huanhuan Yang Yinxiao Tan Tingting Zhao Xiangyang Xu Jingfu Li Jingbin Jiang
author_facet	Yahui Yang Huanhuan Yang Yinxiao Tan Tingting Zhao Xiangyang Xu Jingfu Li Jingbin Jiang
author_sort	Yahui Yang
title	Comparative Genome Analysis of Genes Regulating Compound Inflorescences in Tomato
title_short	Comparative Genome Analysis of Genes Regulating Compound Inflorescences in Tomato
title_full	Comparative Genome Analysis of Genes Regulating Compound Inflorescences in Tomato
title_fullStr	Comparative Genome Analysis of Genes Regulating Compound Inflorescences in Tomato
title_full_unstemmed	Comparative Genome Analysis of Genes Regulating Compound Inflorescences in Tomato
title_sort	comparative genome analysis of genes regulating compound inflorescences in tomato
publisher	MDPI AG
publishDate	2021
url	https://doaj.org/article/e6fccaf09d3e400f805c5f02b0b073a7
work_keys_str_mv	AT yahuiyang comparativegenomeanalysisofgenesregulatingcompoundinflorescencesintomato AT huanhuanyang comparativegenomeanalysisofgenesregulatingcompoundinflorescencesintomato AT yinxiaotan comparativegenomeanalysisofgenesregulatingcompoundinflorescencesintomato AT tingtingzhao comparativegenomeanalysisofgenesregulatingcompoundinflorescencesintomato AT xiangyangxu comparativegenomeanalysisofgenesregulatingcompoundinflorescencesintomato AT jingfuli comparativegenomeanalysisofgenesregulatingcompoundinflorescencesintomato AT jingbinjiang comparativegenomeanalysisofgenesregulatingcompoundinflorescencesintomato
_version_	1718411837042589696

Comparative Genome Analysis of Genes Regulating Compound Inflorescences in Tomato

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