Visualization and analysis of 3D microscopic images.

In a wide range of biological studies, it is highly desirable to visualize and analyze three-dimensional (3D) microscopic images. In this primer, we first introduce several major methods for visualizing typical 3D images and related multi-scale, multi-time-point, multi-color data sets. Then, we disc...

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Autores principales:	Fuhui Long, Jianlong Zhou, Hanchuan Peng
Formato:	article
Lenguaje:	EN
Publicado:	Public Library of Science (PLoS) 2012
Materias:	Biology (General) QH301-705.5
Acceso en línea:	https://doaj.org/article/e7845a128cda4655abed2dd3f6974298
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id	oai:doaj.org-article:e7845a128cda4655abed2dd3f6974298
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spelling	oai:doaj.org-article:e7845a128cda4655abed2dd3f69742982021-11-18T05:51:16ZVisualization and analysis of 3D microscopic images.1553-734X1553-735810.1371/journal.pcbi.1002519https://doaj.org/article/e7845a128cda4655abed2dd3f69742982012-01-01T00:00:00Zhttps://www.ncbi.nlm.nih.gov/pmc/articles/pmid/22719236/?tool=EBIhttps://doaj.org/toc/1553-734Xhttps://doaj.org/toc/1553-7358In a wide range of biological studies, it is highly desirable to visualize and analyze three-dimensional (3D) microscopic images. In this primer, we first introduce several major methods for visualizing typical 3D images and related multi-scale, multi-time-point, multi-color data sets. Then, we discuss three key categories of image analysis tasks, namely segmentation, registration, and annotation. We demonstrate how to pipeline these visualization and analysis modules using examples of profiling the single-cell gene-expression of C. elegans and constructing a map of stereotyped neurite tracts in a fruit fly brain.Fuhui LongJianlong ZhouHanchuan PengPublic Library of Science (PLoS)articleBiology (General)QH301-705.5ENPLoS Computational Biology, Vol 8, Iss 6, p e1002519 (2012)
institution	DOAJ
collection	DOAJ
language	EN
topic	Biology (General) QH301-705.5
spellingShingle	Biology (General) QH301-705.5 Fuhui Long Jianlong Zhou Hanchuan Peng Visualization and analysis of 3D microscopic images.
description	In a wide range of biological studies, it is highly desirable to visualize and analyze three-dimensional (3D) microscopic images. In this primer, we first introduce several major methods for visualizing typical 3D images and related multi-scale, multi-time-point, multi-color data sets. Then, we discuss three key categories of image analysis tasks, namely segmentation, registration, and annotation. We demonstrate how to pipeline these visualization and analysis modules using examples of profiling the single-cell gene-expression of C. elegans and constructing a map of stereotyped neurite tracts in a fruit fly brain.
format	article
author	Fuhui Long Jianlong Zhou Hanchuan Peng
author_facet	Fuhui Long Jianlong Zhou Hanchuan Peng
author_sort	Fuhui Long
title	Visualization and analysis of 3D microscopic images.
title_short	Visualization and analysis of 3D microscopic images.
title_full	Visualization and analysis of 3D microscopic images.
title_fullStr	Visualization and analysis of 3D microscopic images.
title_full_unstemmed	Visualization and analysis of 3D microscopic images.
title_sort	visualization and analysis of 3d microscopic images.
publisher	Public Library of Science (PLoS)
publishDate	2012
url	https://doaj.org/article/e7845a128cda4655abed2dd3f6974298
work_keys_str_mv	AT fuhuilong visualizationandanalysisof3dmicroscopicimages AT jianlongzhou visualizationandanalysisof3dmicroscopicimages AT hanchuanpeng visualizationandanalysisof3dmicroscopicimages
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Visualization and analysis of 3D microscopic images.

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