Kouprey (Bos sauveli) genomes unveil polytomic origin of wild Asian Bos

Summary: The evolution of the genera Bos and Bison, and the nature of gene flow between wild and domestic species, is poorly understood, with genomic data of wild species being limited. We generated two genomes from the likely extinct kouprey (Bos sauveli) and analyzed them alongside other Bos and B...

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Autores principales:	Mikkel-Holger S. Sinding, Marta M. Ciucani, Jazmín Ramos-Madrigal, Alberto Carmagnini, Jacob Agerbo Rasmussen, Shaohong Feng, Guangji Chen, Filipe G. Vieira, Valeria Mattiangeli, Rajinder K. Ganjoo, Greger Larson, Thomas Sicheritz-Pontén, Bent Petersen, Laurent Frantz, M. Thomas P. Gilbert, Daniel G. Bradley
Formato:	article
Lenguaje:	EN
Publicado:	Elsevier 2021
Materias:	Biological sciences Evolutionary biology Phylogenetics Science Q
Acceso en línea:	https://doaj.org/article/e79ecb22450046838b0fab872a78601e
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spelling	oai:doaj.org-article:e79ecb22450046838b0fab872a78601e2021-11-20T05:08:31ZKouprey (Bos sauveli) genomes unveil polytomic origin of wild Asian Bos2589-004210.1016/j.isci.2021.103226https://doaj.org/article/e79ecb22450046838b0fab872a78601e2021-11-01T00:00:00Zhttp://www.sciencedirect.com/science/article/pii/S2589004221011949https://doaj.org/toc/2589-0042Summary: The evolution of the genera Bos and Bison, and the nature of gene flow between wild and domestic species, is poorly understood, with genomic data of wild species being limited. We generated two genomes from the likely extinct kouprey (Bos sauveli) and analyzed them alongside other Bos and Bison genomes. We found that B. sauveli possessed genomic signatures characteristic of an independent species closely related to Bos javanicus and Bos gaurus. We found evidence for extensive incomplete lineage sorting across the three species, consistent with a polytomic diversification of the major ancestry in the group, potentially followed by secondary gene flow. Finally, we detected significant gene flow from an unsampled Asian Bos-like source into East Asian zebu cattle, demonstrating both that the full genomic diversity and evolutionary history of the Bos complex has yet to be elucidated and that museum specimens and ancient DNA are valuable resources to do so.Mikkel-Holger S. SindingMarta M. CiucaniJazmín Ramos-MadrigalAlberto CarmagniniJacob Agerbo RasmussenShaohong FengGuangji ChenFilipe G. VieiraValeria MattiangeliRajinder K. GanjooGreger LarsonThomas Sicheritz-PonténBent PetersenLaurent FrantzM. Thomas P. GilbertDaniel G. BradleyElsevierarticleBiological sciencesEvolutionary biologyPhylogeneticsScienceQENiScience, Vol 24, Iss 11, Pp 103226- (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	Biological sciences Evolutionary biology Phylogenetics Science Q
spellingShingle	Biological sciences Evolutionary biology Phylogenetics Science Q Mikkel-Holger S. Sinding Marta M. Ciucani Jazmín Ramos-Madrigal Alberto Carmagnini Jacob Agerbo Rasmussen Shaohong Feng Guangji Chen Filipe G. Vieira Valeria Mattiangeli Rajinder K. Ganjoo Greger Larson Thomas Sicheritz-Pontén Bent Petersen Laurent Frantz M. Thomas P. Gilbert Daniel G. Bradley Kouprey (Bos sauveli) genomes unveil polytomic origin of wild Asian Bos
description	Summary: The evolution of the genera Bos and Bison, and the nature of gene flow between wild and domestic species, is poorly understood, with genomic data of wild species being limited. We generated two genomes from the likely extinct kouprey (Bos sauveli) and analyzed them alongside other Bos and Bison genomes. We found that B. sauveli possessed genomic signatures characteristic of an independent species closely related to Bos javanicus and Bos gaurus. We found evidence for extensive incomplete lineage sorting across the three species, consistent with a polytomic diversification of the major ancestry in the group, potentially followed by secondary gene flow. Finally, we detected significant gene flow from an unsampled Asian Bos-like source into East Asian zebu cattle, demonstrating both that the full genomic diversity and evolutionary history of the Bos complex has yet to be elucidated and that museum specimens and ancient DNA are valuable resources to do so.
format	article
author	Mikkel-Holger S. Sinding Marta M. Ciucani Jazmín Ramos-Madrigal Alberto Carmagnini Jacob Agerbo Rasmussen Shaohong Feng Guangji Chen Filipe G. Vieira Valeria Mattiangeli Rajinder K. Ganjoo Greger Larson Thomas Sicheritz-Pontén Bent Petersen Laurent Frantz M. Thomas P. Gilbert Daniel G. Bradley
author_facet	Mikkel-Holger S. Sinding Marta M. Ciucani Jazmín Ramos-Madrigal Alberto Carmagnini Jacob Agerbo Rasmussen Shaohong Feng Guangji Chen Filipe G. Vieira Valeria Mattiangeli Rajinder K. Ganjoo Greger Larson Thomas Sicheritz-Pontén Bent Petersen Laurent Frantz M. Thomas P. Gilbert Daniel G. Bradley
author_sort	Mikkel-Holger S. Sinding
title	Kouprey (Bos sauveli) genomes unveil polytomic origin of wild Asian Bos
title_short	Kouprey (Bos sauveli) genomes unveil polytomic origin of wild Asian Bos
title_full	Kouprey (Bos sauveli) genomes unveil polytomic origin of wild Asian Bos
title_fullStr	Kouprey (Bos sauveli) genomes unveil polytomic origin of wild Asian Bos
title_full_unstemmed	Kouprey (Bos sauveli) genomes unveil polytomic origin of wild Asian Bos
title_sort	kouprey (bos sauveli) genomes unveil polytomic origin of wild asian bos
publisher	Elsevier
publishDate	2021
url	https://doaj.org/article/e79ecb22450046838b0fab872a78601e
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Kouprey (Bos sauveli) genomes unveil polytomic origin of wild Asian Bos

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