Genome-wide identification, evolution, and transcript profiling of Aldehyde dehydrogenase superfamily in potato during development stages and stress conditions

Abstract The Aldehyde dehydrogenase (ALDH) superfamily comprises a group of enzymes involved in the scavenging of toxic aldehyde molecules by converting them into their corresponding non-toxic carboxylic acids. A genome-wide study in potato identified a total of 22 ALDH genes grouped into ten famili...

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Autores principales:	Md. Sifatul Islam, Md. Soyib Hasan, Md. Nazmul Hasan, Shamsul H. Prodhan, Tahmina Islam, Ajit Ghosh
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2021
Materias:	Medicine R Science Q
Acceso en línea:	https://doaj.org/article/e7cf3c25e3d2493c9528fcacb9dc0281
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spelling	oai:doaj.org-article:e7cf3c25e3d2493c9528fcacb9dc02812021-12-02T15:15:35ZGenome-wide identification, evolution, and transcript profiling of Aldehyde dehydrogenase superfamily in potato during development stages and stress conditions10.1038/s41598-021-97691-92045-2322https://doaj.org/article/e7cf3c25e3d2493c9528fcacb9dc02812021-09-01T00:00:00Zhttps://doi.org/10.1038/s41598-021-97691-9https://doaj.org/toc/2045-2322Abstract The Aldehyde dehydrogenase (ALDH) superfamily comprises a group of enzymes involved in the scavenging of toxic aldehyde molecules by converting them into their corresponding non-toxic carboxylic acids. A genome-wide study in potato identified a total of 22 ALDH genes grouped into ten families that are presented unevenly throughout all the 12 chromosomes. Based on the evolutionary analysis of ALDH proteins from different plant species, ALDH2 and ALDH3 were found to be the most abundant families in the plant, while ALDH18 was found to be the most distantly related one. Gene expression analysis revealed that the expression of StALDH genes is highly tissue-specific and divergent in various abiotic, biotic, and hormonal treatments. Structural modelling and functional analysis of selected StALDH members revealed conservancy in their secondary structures and cofactor binding sites. Taken together, our findings provide comprehensive information on the ALDH gene family in potato that will help in developing a framework for further functional studies.Md. Sifatul IslamMd. Soyib HasanMd. Nazmul HasanShamsul H. ProdhanTahmina IslamAjit GhoshNature PortfolioarticleMedicineRScienceQENScientific Reports, Vol 11, Iss 1, Pp 1-17 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	Medicine R Science Q
spellingShingle	Medicine R Science Q Md. Sifatul Islam Md. Soyib Hasan Md. Nazmul Hasan Shamsul H. Prodhan Tahmina Islam Ajit Ghosh Genome-wide identification, evolution, and transcript profiling of Aldehyde dehydrogenase superfamily in potato during development stages and stress conditions
description	Abstract The Aldehyde dehydrogenase (ALDH) superfamily comprises a group of enzymes involved in the scavenging of toxic aldehyde molecules by converting them into their corresponding non-toxic carboxylic acids. A genome-wide study in potato identified a total of 22 ALDH genes grouped into ten families that are presented unevenly throughout all the 12 chromosomes. Based on the evolutionary analysis of ALDH proteins from different plant species, ALDH2 and ALDH3 were found to be the most abundant families in the plant, while ALDH18 was found to be the most distantly related one. Gene expression analysis revealed that the expression of StALDH genes is highly tissue-specific and divergent in various abiotic, biotic, and hormonal treatments. Structural modelling and functional analysis of selected StALDH members revealed conservancy in their secondary structures and cofactor binding sites. Taken together, our findings provide comprehensive information on the ALDH gene family in potato that will help in developing a framework for further functional studies.
format	article
author	Md. Sifatul Islam Md. Soyib Hasan Md. Nazmul Hasan Shamsul H. Prodhan Tahmina Islam Ajit Ghosh
author_facet	Md. Sifatul Islam Md. Soyib Hasan Md. Nazmul Hasan Shamsul H. Prodhan Tahmina Islam Ajit Ghosh
author_sort	Md. Sifatul Islam
title	Genome-wide identification, evolution, and transcript profiling of Aldehyde dehydrogenase superfamily in potato during development stages and stress conditions
title_short	Genome-wide identification, evolution, and transcript profiling of Aldehyde dehydrogenase superfamily in potato during development stages and stress conditions
title_full	Genome-wide identification, evolution, and transcript profiling of Aldehyde dehydrogenase superfamily in potato during development stages and stress conditions
title_fullStr	Genome-wide identification, evolution, and transcript profiling of Aldehyde dehydrogenase superfamily in potato during development stages and stress conditions
title_full_unstemmed	Genome-wide identification, evolution, and transcript profiling of Aldehyde dehydrogenase superfamily in potato during development stages and stress conditions
title_sort	genome-wide identification, evolution, and transcript profiling of aldehyde dehydrogenase superfamily in potato during development stages and stress conditions
publisher	Nature Portfolio
publishDate	2021
url	https://doaj.org/article/e7cf3c25e3d2493c9528fcacb9dc0281
work_keys_str_mv	AT mdsifatulislam genomewideidentificationevolutionandtranscriptprofilingofaldehydedehydrogenasesuperfamilyinpotatoduringdevelopmentstagesandstressconditions AT mdsoyibhasan genomewideidentificationevolutionandtranscriptprofilingofaldehydedehydrogenasesuperfamilyinpotatoduringdevelopmentstagesandstressconditions AT mdnazmulhasan genomewideidentificationevolutionandtranscriptprofilingofaldehydedehydrogenasesuperfamilyinpotatoduringdevelopmentstagesandstressconditions AT shamsulhprodhan genomewideidentificationevolutionandtranscriptprofilingofaldehydedehydrogenasesuperfamilyinpotatoduringdevelopmentstagesandstressconditions AT tahminaislam genomewideidentificationevolutionandtranscriptprofilingofaldehydedehydrogenasesuperfamilyinpotatoduringdevelopmentstagesandstressconditions AT ajitghosh genomewideidentificationevolutionandtranscriptprofilingofaldehydedehydrogenasesuperfamilyinpotatoduringdevelopmentstagesandstressconditions
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Genome-wide identification, evolution, and transcript profiling of Aldehyde dehydrogenase superfamily in potato during development stages and stress conditions

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