Comprehensive identification of transposable element insertions using multiple sequencing technologies

Identification of transposable element (TE) insertions from whole genome sequencing data remains challenging. Here the authors developed a comprehensive TE insertion detection algorithm xTea that can be applied to both short-read and long-read sequencing data.

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Autores principales:	Chong Chu, Rebeca Borges-Monroy, Vinayak V. Viswanadham, Soohyun Lee, Heng Li, Eunjung Alice Lee, Peter J. Park
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2021
Materias:	Science Q
Acceso en línea:	https://doaj.org/article/e8c2845aa0574d878ee04dbda688b8f8
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spelling	oai:doaj.org-article:e8c2845aa0574d878ee04dbda688b8f82021-12-02T17:45:15ZComprehensive identification of transposable element insertions using multiple sequencing technologies10.1038/s41467-021-24041-82041-1723https://doaj.org/article/e8c2845aa0574d878ee04dbda688b8f82021-06-01T00:00:00Zhttps://doi.org/10.1038/s41467-021-24041-8https://doaj.org/toc/2041-1723Identification of transposable element (TE) insertions from whole genome sequencing data remains challenging. Here the authors developed a comprehensive TE insertion detection algorithm xTea that can be applied to both short-read and long-read sequencing data.Chong ChuRebeca Borges-MonroyVinayak V. ViswanadhamSoohyun LeeHeng LiEunjung Alice LeePeter J. ParkNature PortfolioarticleScienceQENNature Communications, Vol 12, Iss 1, Pp 1-12 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	Science Q
spellingShingle	Science Q Chong Chu Rebeca Borges-Monroy Vinayak V. Viswanadham Soohyun Lee Heng Li Eunjung Alice Lee Peter J. Park Comprehensive identification of transposable element insertions using multiple sequencing technologies
description	Identification of transposable element (TE) insertions from whole genome sequencing data remains challenging. Here the authors developed a comprehensive TE insertion detection algorithm xTea that can be applied to both short-read and long-read sequencing data.
format	article
author	Chong Chu Rebeca Borges-Monroy Vinayak V. Viswanadham Soohyun Lee Heng Li Eunjung Alice Lee Peter J. Park
author_facet	Chong Chu Rebeca Borges-Monroy Vinayak V. Viswanadham Soohyun Lee Heng Li Eunjung Alice Lee Peter J. Park
author_sort	Chong Chu
title	Comprehensive identification of transposable element insertions using multiple sequencing technologies
title_short	Comprehensive identification of transposable element insertions using multiple sequencing technologies
title_full	Comprehensive identification of transposable element insertions using multiple sequencing technologies
title_fullStr	Comprehensive identification of transposable element insertions using multiple sequencing technologies
title_full_unstemmed	Comprehensive identification of transposable element insertions using multiple sequencing technologies
title_sort	comprehensive identification of transposable element insertions using multiple sequencing technologies
publisher	Nature Portfolio
publishDate	2021
url	https://doaj.org/article/e8c2845aa0574d878ee04dbda688b8f8
work_keys_str_mv	AT chongchu comprehensiveidentificationoftransposableelementinsertionsusingmultiplesequencingtechnologies AT rebecaborgesmonroy comprehensiveidentificationoftransposableelementinsertionsusingmultiplesequencingtechnologies AT vinayakvviswanadham comprehensiveidentificationoftransposableelementinsertionsusingmultiplesequencingtechnologies AT soohyunlee comprehensiveidentificationoftransposableelementinsertionsusingmultiplesequencingtechnologies AT hengli comprehensiveidentificationoftransposableelementinsertionsusingmultiplesequencingtechnologies AT eunjungalicelee comprehensiveidentificationoftransposableelementinsertionsusingmultiplesequencingtechnologies AT peterjpark comprehensiveidentificationoftransposableelementinsertionsusingmultiplesequencingtechnologies
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Comprehensive identification of transposable element insertions using multiple sequencing technologies

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