DNA barcoding of lamp shells (Brachiopoda: Lingula anatina) from Probolinggo, East Java, Indonesia

Abstract. Ambarwati R, Rahayu DA, Rachmadiarti F, Khaleyla F. 2021. DNA barcoding of lamp shells (Brachiopoda: Lingula anatina) from Probolinggo, East Java, Indonesia. Biodiversitas 22: 1764-1774. Lingula anatina is one of brachiopods found in tropical regions, however, the reports on this species f...

Descripción completa

Guardado en:

Detalles Bibliográficos
Autores principales:	Reni Ambarwati, Dwi Anggorowati Rahayu, Fida Rachmadiarti, Firas Khaleyla
Formato:	article
Lenguaje:	EN
Publicado:	MBI & UNS Solo 2021
Materias:	brachiopod, dna barcode, haplotype, lingula anatina, species identification Biology (General) QH301-705.5
Acceso en línea:	https://doaj.org/article/edf38539e6254e2f9db4ba485b5c22a2
Etiquetas:	Agregar Etiqueta Sin Etiquetas, Sea el primero en etiquetar este registro!

id	oai:doaj.org-article:edf38539e6254e2f9db4ba485b5c22a2
record_format	dspace
spelling	oai:doaj.org-article:edf38539e6254e2f9db4ba485b5c22a22021-11-22T00:57:38ZDNA barcoding of lamp shells (Brachiopoda: Lingula anatina) from Probolinggo, East Java, Indonesia1412-033X2085-472210.13057/biodiv/d220421https://doaj.org/article/edf38539e6254e2f9db4ba485b5c22a22021-03-01T00:00:00Zhttps://smujo.id/biodiv/article/view/7225https://doaj.org/toc/1412-033Xhttps://doaj.org/toc/2085-4722Abstract. Ambarwati R, Rahayu DA, Rachmadiarti F, Khaleyla F. 2021. DNA barcoding of lamp shells (Brachiopoda: Lingula anatina) from Probolinggo, East Java, Indonesia. Biodiversitas 22: 1764-1774. Lingula anatina is one of brachiopods found in tropical regions, however, the reports on this species from South East Asia is currently limited. This study, therefore, aims to identify the Cytochrome Oxidase subunit I (COI) sequence and phylogenetic of lamp shells from Probolinggo, Indonesia. A total of five samples of lamp shells were collected from Probolinggo, Indonesia, then identified based on morphological characters, and the identification was confirmed using molecular data. Subsequently, molecular characterization and identification were conducted based on 657 bp of COI gene similarity, sequence variation, genetic distance, phylogenetic topology, and BOLD System. According to the results, the Lingula species found in Probolinggo Indonesia was Lingula anatina. The median-joining network and Automatic Barcode Gap Discovery (ABGD) analysis showed this Lingula anatina population from Probolinggo had relatives of 22 haplotypes and divided into six haplogroups. Furthermore, the population belonged to the same haplogroup but had different haplotypes. Thus, this study provides more information for Lingula anatina phylogenetic and haplotype studies.Reni AmbarwatiDwi Anggorowati RahayuFida RachmadiartiFiras KhaleylaMBI & UNS Soloarticlebrachiopod, dna barcode, haplotype, lingula anatina, species identificationBiology (General)QH301-705.5ENBiodiversitas, Vol 22, Iss 4 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	brachiopod, dna barcode, haplotype, lingula anatina, species identification Biology (General) QH301-705.5
spellingShingle	brachiopod, dna barcode, haplotype, lingula anatina, species identification Biology (General) QH301-705.5 Reni Ambarwati Dwi Anggorowati Rahayu Fida Rachmadiarti Firas Khaleyla DNA barcoding of lamp shells (Brachiopoda: Lingula anatina) from Probolinggo, East Java, Indonesia
description	Abstract. Ambarwati R, Rahayu DA, Rachmadiarti F, Khaleyla F. 2021. DNA barcoding of lamp shells (Brachiopoda: Lingula anatina) from Probolinggo, East Java, Indonesia. Biodiversitas 22: 1764-1774. Lingula anatina is one of brachiopods found in tropical regions, however, the reports on this species from South East Asia is currently limited. This study, therefore, aims to identify the Cytochrome Oxidase subunit I (COI) sequence and phylogenetic of lamp shells from Probolinggo, Indonesia. A total of five samples of lamp shells were collected from Probolinggo, Indonesia, then identified based on morphological characters, and the identification was confirmed using molecular data. Subsequently, molecular characterization and identification were conducted based on 657 bp of COI gene similarity, sequence variation, genetic distance, phylogenetic topology, and BOLD System. According to the results, the Lingula species found in Probolinggo Indonesia was Lingula anatina. The median-joining network and Automatic Barcode Gap Discovery (ABGD) analysis showed this Lingula anatina population from Probolinggo had relatives of 22 haplotypes and divided into six haplogroups. Furthermore, the population belonged to the same haplogroup but had different haplotypes. Thus, this study provides more information for Lingula anatina phylogenetic and haplotype studies.
format	article
author	Reni Ambarwati Dwi Anggorowati Rahayu Fida Rachmadiarti Firas Khaleyla
author_facet	Reni Ambarwati Dwi Anggorowati Rahayu Fida Rachmadiarti Firas Khaleyla
author_sort	Reni Ambarwati
title	DNA barcoding of lamp shells (Brachiopoda: Lingula anatina) from Probolinggo, East Java, Indonesia
title_short	DNA barcoding of lamp shells (Brachiopoda: Lingula anatina) from Probolinggo, East Java, Indonesia
title_full	DNA barcoding of lamp shells (Brachiopoda: Lingula anatina) from Probolinggo, East Java, Indonesia
title_fullStr	DNA barcoding of lamp shells (Brachiopoda: Lingula anatina) from Probolinggo, East Java, Indonesia
title_full_unstemmed	DNA barcoding of lamp shells (Brachiopoda: Lingula anatina) from Probolinggo, East Java, Indonesia
title_sort	dna barcoding of lamp shells (brachiopoda: lingula anatina) from probolinggo, east java, indonesia
publisher	MBI & UNS Solo
publishDate	2021
url	https://doaj.org/article/edf38539e6254e2f9db4ba485b5c22a2
work_keys_str_mv	AT reniambarwati dnabarcodingoflampshellsbrachiopodalingulaanatinafromprobolinggoeastjavaindonesia AT dwianggorowatirahayu dnabarcodingoflampshellsbrachiopodalingulaanatinafromprobolinggoeastjavaindonesia AT fidarachmadiarti dnabarcodingoflampshellsbrachiopodalingulaanatinafromprobolinggoeastjavaindonesia AT firaskhaleyla dnabarcodingoflampshellsbrachiopodalingulaanatinafromprobolinggoeastjavaindonesia
_version_	1718418435827826688

DNA barcoding of lamp shells (Brachiopoda: Lingula anatina) from Probolinggo, East Java, Indonesia

Ejemplares similares