Comparative Analysis of Coding and Non-Coding Features within Insect Tolerance Loci in Wheat with Their Homologs in Cereal Genomes

Food insecurity and malnutrition have reached critical levels with increased human population, climate fluctuations, water shortage; therefore, higher-yielding crops are in the spotlight of numerous studies. Abiotic factors affect the yield of staple food crops; among all, wheat stem sawfly (<i&g...

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Autores principales:	Tugdem Muslu, Bala Ani Akpinar, Sezgi Biyiklioglu-Kaya, Meral Yuce, Hikmet Budak
Formato:	article
Lenguaje:	EN
Publicado:	MDPI AG 2021
Materias:	<i>WSS</i> <i>OWBM</i> resistance genome organization wheat cereals Biology (General) QH301-705.5 Chemistry QD1-999
Acceso en línea:	https://doaj.org/article/f38d595aac834ebdad582874fb6ae482
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spelling	oai:doaj.org-article:f38d595aac834ebdad582874fb6ae4822021-11-25T17:55:37ZComparative Analysis of Coding and Non-Coding Features within Insect Tolerance Loci in Wheat with Their Homologs in Cereal Genomes10.3390/ijms2222123491422-00671661-6596https://doaj.org/article/f38d595aac834ebdad582874fb6ae4822021-11-01T00:00:00Zhttps://www.mdpi.com/1422-0067/22/22/12349https://doaj.org/toc/1661-6596https://doaj.org/toc/1422-0067Food insecurity and malnutrition have reached critical levels with increased human population, climate fluctuations, water shortage; therefore, higher-yielding crops are in the spotlight of numerous studies. Abiotic factors affect the yield of staple food crops; among all, wheat stem sawfly (<i>Cephus cinctus</i> Norton) and orange wheat blossom midge (<i>Sitodiplosis mosellana</i>) are two of the most economically and agronomically harmful insect pests which cause yield loss in cereals, especially in wheat in North America. There is no effective strategy for suppressing this pest damage yet, and only the plants with intrinsic tolerance mechanisms such as solid stem phenotypes for <i>WSS</i> and antixenosis and/or antibiosis mechanisms for <i>OWBM</i> can limit damage. A major QTL and a causal gene for <i>WSS</i> resistance were previously identified in wheat, and 3 major QTLs and a causal gene for <i>OWBM</i> resistance. Here, we present a comparative analysis of coding and non-coding features of these loci of wheat across important cereal crops, barley, rye, oat, and rice. This research paves the way for our cloning and editing of additional <i>WSS</i> and <i>OWBM</i> tolerance gene(s), proteins, and metabolites.Tugdem MusluBala Ani AkpinarSezgi Biyiklioglu-KayaMeral YuceHikmet BudakMDPI AGarticle<i>WSS</i><i>OWBM</i>resistancegenome organizationwheatcerealsBiology (General)QH301-705.5ChemistryQD1-999ENInternational Journal of Molecular Sciences, Vol 22, Iss 12349, p 12349 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	<i>WSS</i> <i>OWBM</i> resistance genome organization wheat cereals Biology (General) QH301-705.5 Chemistry QD1-999
spellingShingle	<i>WSS</i> <i>OWBM</i> resistance genome organization wheat cereals Biology (General) QH301-705.5 Chemistry QD1-999 Tugdem Muslu Bala Ani Akpinar Sezgi Biyiklioglu-Kaya Meral Yuce Hikmet Budak Comparative Analysis of Coding and Non-Coding Features within Insect Tolerance Loci in Wheat with Their Homologs in Cereal Genomes
description	Food insecurity and malnutrition have reached critical levels with increased human population, climate fluctuations, water shortage; therefore, higher-yielding crops are in the spotlight of numerous studies. Abiotic factors affect the yield of staple food crops; among all, wheat stem sawfly (<i>Cephus cinctus</i> Norton) and orange wheat blossom midge (<i>Sitodiplosis mosellana</i>) are two of the most economically and agronomically harmful insect pests which cause yield loss in cereals, especially in wheat in North America. There is no effective strategy for suppressing this pest damage yet, and only the plants with intrinsic tolerance mechanisms such as solid stem phenotypes for <i>WSS</i> and antixenosis and/or antibiosis mechanisms for <i>OWBM</i> can limit damage. A major QTL and a causal gene for <i>WSS</i> resistance were previously identified in wheat, and 3 major QTLs and a causal gene for <i>OWBM</i> resistance. Here, we present a comparative analysis of coding and non-coding features of these loci of wheat across important cereal crops, barley, rye, oat, and rice. This research paves the way for our cloning and editing of additional <i>WSS</i> and <i>OWBM</i> tolerance gene(s), proteins, and metabolites.
format	article
author	Tugdem Muslu Bala Ani Akpinar Sezgi Biyiklioglu-Kaya Meral Yuce Hikmet Budak
author_facet	Tugdem Muslu Bala Ani Akpinar Sezgi Biyiklioglu-Kaya Meral Yuce Hikmet Budak
author_sort	Tugdem Muslu
title	Comparative Analysis of Coding and Non-Coding Features within Insect Tolerance Loci in Wheat with Their Homologs in Cereal Genomes
title_short	Comparative Analysis of Coding and Non-Coding Features within Insect Tolerance Loci in Wheat with Their Homologs in Cereal Genomes
title_full	Comparative Analysis of Coding and Non-Coding Features within Insect Tolerance Loci in Wheat with Their Homologs in Cereal Genomes
title_fullStr	Comparative Analysis of Coding and Non-Coding Features within Insect Tolerance Loci in Wheat with Their Homologs in Cereal Genomes
title_full_unstemmed	Comparative Analysis of Coding and Non-Coding Features within Insect Tolerance Loci in Wheat with Their Homologs in Cereal Genomes
title_sort	comparative analysis of coding and non-coding features within insect tolerance loci in wheat with their homologs in cereal genomes
publisher	MDPI AG
publishDate	2021
url	https://doaj.org/article/f38d595aac834ebdad582874fb6ae482
work_keys_str_mv	AT tugdemmuslu comparativeanalysisofcodingandnoncodingfeatureswithininsecttolerancelociinwheatwiththeirhomologsincerealgenomes AT balaaniakpinar comparativeanalysisofcodingandnoncodingfeatureswithininsecttolerancelociinwheatwiththeirhomologsincerealgenomes AT sezgibiyiklioglukaya comparativeanalysisofcodingandnoncodingfeatureswithininsecttolerancelociinwheatwiththeirhomologsincerealgenomes AT meralyuce comparativeanalysisofcodingandnoncodingfeatureswithininsecttolerancelociinwheatwiththeirhomologsincerealgenomes AT hikmetbudak comparativeanalysisofcodingandnoncodingfeatureswithininsecttolerancelociinwheatwiththeirhomologsincerealgenomes
_version_	1718411839429148672

Comparative Analysis of Coding and Non-Coding Features within Insect Tolerance Loci in Wheat with Their Homologs in Cereal Genomes

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