The effect of genetic variation on promoter usage and enhancer activity

Expression quantitative trait loci (eQTL) are widely studied, yet the mechanisms by which they exert their effects are largely unknown. Here, performing CAGE-seq on 154 lymphoblastoid cell lines, the authors map regulatory variants associated with promoter usage (puQTLs) and enhancer activity (eaQTL...

Descripción completa

Guardado en:
Detalles Bibliográficos
Autores principales: Marco Garieri, Olivier Delaneau, Federico Santoni, Richard J. Fish, David Mull, Piero Carninci, Emmanouil T. Dermitzakis, Stylianos E. Antonarakis, Alexandre Fort
Formato: article
Lenguaje:EN
Publicado: Nature Portfolio 2017
Materias:
Q
Acceso en línea:https://doaj.org/article/f898d3fe6d3f4ed39e819f0b0e5b759b
Etiquetas: Agregar Etiqueta
Sin Etiquetas, Sea el primero en etiquetar este registro!
id oai:doaj.org-article:f898d3fe6d3f4ed39e819f0b0e5b759b
record_format dspace
spelling oai:doaj.org-article:f898d3fe6d3f4ed39e819f0b0e5b759b2021-12-02T14:42:39ZThe effect of genetic variation on promoter usage and enhancer activity10.1038/s41467-017-01467-72041-1723https://doaj.org/article/f898d3fe6d3f4ed39e819f0b0e5b759b2017-11-01T00:00:00Zhttps://doi.org/10.1038/s41467-017-01467-7https://doaj.org/toc/2041-1723Expression quantitative trait loci (eQTL) are widely studied, yet the mechanisms by which they exert their effects are largely unknown. Here, performing CAGE-seq on 154 lymphoblastoid cell lines, the authors map regulatory variants associated with promoter usage (puQTLs) and enhancer activity (eaQTLs).Marco GarieriOlivier DelaneauFederico SantoniRichard J. FishDavid MullPiero CarninciEmmanouil T. DermitzakisStylianos E. AntonarakisAlexandre FortNature PortfolioarticleScienceQENNature Communications, Vol 8, Iss 1, Pp 1-9 (2017)
institution DOAJ
collection DOAJ
language EN
topic Science
Q
spellingShingle Science
Q
Marco Garieri
Olivier Delaneau
Federico Santoni
Richard J. Fish
David Mull
Piero Carninci
Emmanouil T. Dermitzakis
Stylianos E. Antonarakis
Alexandre Fort
The effect of genetic variation on promoter usage and enhancer activity
description Expression quantitative trait loci (eQTL) are widely studied, yet the mechanisms by which they exert their effects are largely unknown. Here, performing CAGE-seq on 154 lymphoblastoid cell lines, the authors map regulatory variants associated with promoter usage (puQTLs) and enhancer activity (eaQTLs).
format article
author Marco Garieri
Olivier Delaneau
Federico Santoni
Richard J. Fish
David Mull
Piero Carninci
Emmanouil T. Dermitzakis
Stylianos E. Antonarakis
Alexandre Fort
author_facet Marco Garieri
Olivier Delaneau
Federico Santoni
Richard J. Fish
David Mull
Piero Carninci
Emmanouil T. Dermitzakis
Stylianos E. Antonarakis
Alexandre Fort
author_sort Marco Garieri
title The effect of genetic variation on promoter usage and enhancer activity
title_short The effect of genetic variation on promoter usage and enhancer activity
title_full The effect of genetic variation on promoter usage and enhancer activity
title_fullStr The effect of genetic variation on promoter usage and enhancer activity
title_full_unstemmed The effect of genetic variation on promoter usage and enhancer activity
title_sort effect of genetic variation on promoter usage and enhancer activity
publisher Nature Portfolio
publishDate 2017
url https://doaj.org/article/f898d3fe6d3f4ed39e819f0b0e5b759b
work_keys_str_mv AT marcogarieri theeffectofgeneticvariationonpromoterusageandenhanceractivity
AT olivierdelaneau theeffectofgeneticvariationonpromoterusageandenhanceractivity
AT federicosantoni theeffectofgeneticvariationonpromoterusageandenhanceractivity
AT richardjfish theeffectofgeneticvariationonpromoterusageandenhanceractivity
AT davidmull theeffectofgeneticvariationonpromoterusageandenhanceractivity
AT pierocarninci theeffectofgeneticvariationonpromoterusageandenhanceractivity
AT emmanouiltdermitzakis theeffectofgeneticvariationonpromoterusageandenhanceractivity
AT stylianoseantonarakis theeffectofgeneticvariationonpromoterusageandenhanceractivity
AT alexandrefort theeffectofgeneticvariationonpromoterusageandenhanceractivity
AT marcogarieri effectofgeneticvariationonpromoterusageandenhanceractivity
AT olivierdelaneau effectofgeneticvariationonpromoterusageandenhanceractivity
AT federicosantoni effectofgeneticvariationonpromoterusageandenhanceractivity
AT richardjfish effectofgeneticvariationonpromoterusageandenhanceractivity
AT davidmull effectofgeneticvariationonpromoterusageandenhanceractivity
AT pierocarninci effectofgeneticvariationonpromoterusageandenhanceractivity
AT emmanouiltdermitzakis effectofgeneticvariationonpromoterusageandenhanceractivity
AT stylianoseantonarakis effectofgeneticvariationonpromoterusageandenhanceractivity
AT alexandrefort effectofgeneticvariationonpromoterusageandenhanceractivity
_version_ 1718389667589521408