Characterization of the intestinal microbiota of wild-caught and farmed fine flounder (Paralichthys adspersus)

A comparative analysis of the cultivable intestinal microbiota of farmed (AF) and wild-caught (WF) Paralichthys adspersus was performed. The 16S rRNA gene was used for taxa identification, and the ITS region for strain differentiation. We detected the presence of Vibrio, Bacillus, Photobacterium, St...

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Autores principales:	Salas-Leiva,Joan, Opazo,Rafael, Remond,Camille, Uribe,Eduardo, Velez,Antonio, Romero,Jaime
Lenguaje:	English
Publicado:	Pontificia Universidad Católica de Valparaíso. Facultad de Recursos Naturales. Escuela de Ciencias del Mar 2017
Materias:	microbiota intestinal microbiology fine flounder lactic acid bacteria 16SrRNA
Acceso en línea:	http://www.scielo.cl/scielo.php?script=sci_arttext&pid=S0718-560X2017000200012
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id	oai:scielo:S0718-560X2017000200012
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spelling	oai:scielo:S0718-560X20170002000122017-07-27Characterization of the intestinal microbiota of wild-caught and farmed fine flounder (Paralichthys adspersus)Salas-Leiva,JoanOpazo,RafaelRemond,CamilleUribe,EduardoVelez,AntonioRomero,Jaime microbiota intestinal microbiology fine flounder lactic acid bacteria 16SrRNA A comparative analysis of the cultivable intestinal microbiota of farmed (AF) and wild-caught (WF) Paralichthys adspersus was performed. The 16S rRNA gene was used for taxa identification, and the ITS region for strain differentiation. We detected the presence of Vibrio, Bacillus, Photobacterium, Staphylococcus and Carnobacterium in AF, and Exiguobacterium, Klebsiella, Arthrobacter, Raoultella, Kluyvera, Myroides, Streptococcus, Vagococcus, Staphylococcus, Acinetobacter, Psychrobacter, Lactobacillus, Weissella and Lactococcus in WF. The microbial community was more diverse in WF than in AF. Some bacterial groups were only found in wild-caught fish and may be studied as potential beneficial agents for improving production traits in farmed fish. As the first study of microbiota of P. adspersus, it provides significant information that can potentially help improve farming practices by using strains as species-specific probiotics.info:eu-repo/semantics/openAccessPontificia Universidad Católica de Valparaíso. Facultad de Recursos Naturales. Escuela de Ciencias del MarLatin american journal of aquatic research v.45 n.2 20172017-05-01text/htmlhttp://www.scielo.cl/scielo.php?script=sci_arttext&pid=S0718-560X2017000200012en10.3856/vol45-issue2-fulltext-12
institution	Scielo Chile
collection	Scielo Chile
language	English
topic	microbiota intestinal microbiology fine flounder lactic acid bacteria 16SrRNA
spellingShingle	microbiota intestinal microbiology fine flounder lactic acid bacteria 16SrRNA Salas-Leiva,Joan Opazo,Rafael Remond,Camille Uribe,Eduardo Velez,Antonio Romero,Jaime Characterization of the intestinal microbiota of wild-caught and farmed fine flounder (Paralichthys adspersus)
description	A comparative analysis of the cultivable intestinal microbiota of farmed (AF) and wild-caught (WF) Paralichthys adspersus was performed. The 16S rRNA gene was used for taxa identification, and the ITS region for strain differentiation. We detected the presence of Vibrio, Bacillus, Photobacterium, Staphylococcus and Carnobacterium in AF, and Exiguobacterium, Klebsiella, Arthrobacter, Raoultella, Kluyvera, Myroides, Streptococcus, Vagococcus, Staphylococcus, Acinetobacter, Psychrobacter, Lactobacillus, Weissella and Lactococcus in WF. The microbial community was more diverse in WF than in AF. Some bacterial groups were only found in wild-caught fish and may be studied as potential beneficial agents for improving production traits in farmed fish. As the first study of microbiota of P. adspersus, it provides significant information that can potentially help improve farming practices by using strains as species-specific probiotics.
author	Salas-Leiva,Joan Opazo,Rafael Remond,Camille Uribe,Eduardo Velez,Antonio Romero,Jaime
author_facet	Salas-Leiva,Joan Opazo,Rafael Remond,Camille Uribe,Eduardo Velez,Antonio Romero,Jaime
author_sort	Salas-Leiva,Joan
title	Characterization of the intestinal microbiota of wild-caught and farmed fine flounder (Paralichthys adspersus)
title_short	Characterization of the intestinal microbiota of wild-caught and farmed fine flounder (Paralichthys adspersus)
title_full	Characterization of the intestinal microbiota of wild-caught and farmed fine flounder (Paralichthys adspersus)
title_fullStr	Characterization of the intestinal microbiota of wild-caught and farmed fine flounder (Paralichthys adspersus)
title_full_unstemmed	Characterization of the intestinal microbiota of wild-caught and farmed fine flounder (Paralichthys adspersus)
title_sort	characterization of the intestinal microbiota of wild-caught and farmed fine flounder (paralichthys adspersus)
publisher	Pontificia Universidad Católica de Valparaíso. Facultad de Recursos Naturales. Escuela de Ciencias del Mar
publishDate	2017
url	http://www.scielo.cl/scielo.php?script=sci_arttext&pid=S0718-560X2017000200012
work_keys_str_mv	AT salasleivajoan characterizationoftheintestinalmicrobiotaofwildcaughtandfarmedfineflounderparalichthysadspersus AT opazorafael characterizationoftheintestinalmicrobiotaofwildcaughtandfarmedfineflounderparalichthysadspersus AT remondcamille characterizationoftheintestinalmicrobiotaofwildcaughtandfarmedfineflounderparalichthysadspersus AT uribeeduardo characterizationoftheintestinalmicrobiotaofwildcaughtandfarmedfineflounderparalichthysadspersus AT velezantonio characterizationoftheintestinalmicrobiotaofwildcaughtandfarmedfineflounderparalichthysadspersus AT romerojaime characterizationoftheintestinalmicrobiotaofwildcaughtandfarmedfineflounderparalichthysadspersus
_version_	1714205180514271232

Characterization of the intestinal microbiota of wild-caught and farmed fine flounder (Paralichthys adspersus)

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