The Power of Metabolism for Predicting Microbial Community Dynamics

por Jeremy M. Chacón, William R. Harcombe
Publicado 2019

Metabolic Responses to Polymyxin Treatment in <italic toggle="yes">Acinetobacter baumannii</italic> ATCC 19606: Integrating Transcriptomics and Metabolomics with Genome-Scale Metab...

por Yan Zhu, Jinxin Zhao, Mohd Hafidz Mahamad Maifiah, Tony Velkov, Falk Schreiber, Jian Li
Publicado 2019

Genome-Scale, Constraint-Based Modeling of Nitrogen Oxide Fluxes during Coculture of <italic toggle="yes">Nitrosomonas europaea</italic> and <italic toggle="yes">Nitrobacter winogr...

por Brett L. Mellbye, Andrew T. Giguere, Ganti S. Murthy, Peter J. Bottomley, Luis A. Sayavedra-Soto, Frank W. R. Chaplen
Publicado 2018

Agent Clustering Strategy Based on Metabolic Flux Distribution and Transcriptome Expression for Novel Drug Development

por Yao Ruan, Xiao-Hui Chen, Feng Jiang, Yan-Guang Liu, Xiao-Long Liang, Bo-Min Lv, Hong-Yu Zhang, Qing-Ye Zhang
Publicado 2021

High-Quality Genome-Scale Reconstruction of Corynebacterium glutamicum ATCC 13032

por Martina Feierabend, Martina Feierabend, Alina Renz, Alina Renz, Elisabeth Zelle, Katharina Nöh, Wolfgang Wiechert, Wolfgang Wiechert, Andreas Dräger, Andreas Dräger
Publicado 2021

Integrated Regulatory and Metabolic Networks of the Marine Diatom <italic toggle="yes">Phaeodactylum tricornutum</italic> Predict the Response to Rising CO₂ Levels

por Jennifer Levering, Christopher L. Dupont, Andrew E. Allen, Bernhard O. Palsson, Karsten Zengler
Publicado 2017

Two-species community design of lactic acid bacteria for optimal production of lactate

por Maziya Ibrahim, Karthik Raman
Publicado 2021

Farnesoid X Receptor Signaling Shapes the Gut Microbiota and Controls Hepatic Lipid Metabolism

por Limin Zhang, Cen Xie, Robert G. Nichols, Siu H. J. Chan, Changtao Jiang, Ruixin Hao, Philip B. Smith, Jingwei Cai, Margaret N. Simons, Emmanuel Hatzakis, Costas D. Maranas, Frank J. Gonzalez, Andrew D. Patterson
Publicado 2016

Designing Metabolic Division of Labor in Microbial Communities

por Meghan Thommes, Taiyao Wang, Qi Zhao, Ioannis C. Paschalidis, Daniel Segrè
Publicado 2019

Multi-omics integrative analysis with genome-scale metabolic model simulation reveals global cellular adaptation of Aspergillus niger under industrial enzyme production condition

por Hongzhong Lu, Weiqiang Cao, Xiaoyun Liu, Yufei Sui, Liming Ouyang, Jianye Xia, Mingzhi Huang, Yingping Zhuang, Siliang Zhang, Henk Noorman, Ju Chu
Publicado 2018

Experimentally Validated Reconstruction and Analysis of a Genome-Scale Metabolic Model of an Anaerobic Neocallimastigomycota Fungus

por St. Elmo Wilken, Jonathan M. Monk, Patrick A. Leggieri, Christopher E. Lawson, Thomas S. Lankiewicz, Susanna Seppälä, Chris G. Daum, Jerry Jenkins, Anna M. Lipzen, Stephen J. Mondo, Kerrie W. Barry, Igor V. Grigoriev, John K. Henske, Michael K. Theodorou, Bernhard O. Palsson, Linda R. Petzold, Michelle A. O’Malley
Publicado 2021

Yeast metabolic innovations emerged via expanded metabolic network and gene positive selection

por Hongzhong Lu, Feiran Li, Le Yuan, Iván Domenzain, Rosemary Yu, Hao Wang, Gang Li, Yu Chen, Boyang Ji, Eduard J Kerkhoven, Jens Nielsen
Publicado 2021

Genome‐scale metabolic modeling reveals SARS‐CoV‐2‐induced metabolic changes and antiviral targets

por Kuoyuan Cheng, Laura Martin‐Sancho, Lipika R Pal, Yuan Pu, Laura Riva, Xin Yin, Sanju Sinha, Nishanth Ulhas Nair, Sumit K Chanda, Eytan Ruppin
Publicado 2021

Revealing the Molecular Mechanisms of Alzheimer’s Disease Based on Network Analysis

por Abdulahad Bayraktar, Simon Lam, Ozlem Altay, Xiangyu Li, Meng Yuan, Cheng Zhang, Muhammad Arif, Hasan Turkez, Mathias Uhlén, Saeed Shoaie, Adil Mardinoglu
Publicado 2021