Metatranscriptome Analysis of the Vaginal Microbiota Reveals Potential Mechanisms for Protection against Metronidazole in Bacterial Vaginosis

par Zhi-Luo Deng, Cornelia Gottschick, Sabin Bhuju, Clarissa Masur, Christoph Abels, Irene Wagner-Döbler
Publié 2018

Holistic Assessment of Rumen Microbiome Dynamics through Quantitative Metatranscriptomics Reveals Multifunctional Redundancy during Key Steps of Anaerobic Feed Degradation

par Andrea Söllinger, Alexander Tøsdal Tveit, Morten Poulsen, Samantha Joan Noel, Mia Bengtsson, Jörg Bernhardt, Anne Louise Frydendahl Hellwing, Peter Lund, Katharina Riedel, Christa Schleper, Ole Højberg, Tim Urich
Publié 2018

Regulatory Noncoding Small RNAs Are Diverse and Abundant in an Extremophilic Microbial Community

par Diego R. Gelsinger, Gherman Uritskiy, Rahul Reddy, Adam Munn, Katie Farney, Jocelyne DiRuggiero
Publié 2020

Microbial Functional Responses to Cholesterol Catabolism in Denitrifying Sludge

par Sean Ting-Shyang Wei, Yu-Wei Wu, Tzong-Huei Lee, Yi-Shiang Huang, Cheng-Yu Yang, Yi-Lung Chen, Yin-Ru Chiang
Publié 2018

Cystic Fibrosis Rapid Response: Translating Multi-omics Data into Clinically Relevant Information

par Ana Georgina Cobián Güemes, Yan Wei Lim, Robert A. Quinn, Douglas J. Conrad, Sean Benler, Heather Maughan, Rob Edwards, Thomas Brettin, Vito Adrian Cantú, Daniel Cuevas, Rohaum Hamidi, Pieter Dorrestein, Forest Rohwer
Publié 2019

Metabolic Network Analysis and Metatranscriptomics Reveal Auxotrophies and Nutrient Sources of the Cosmopolitan Freshwater Microbial Lineage acI

par Joshua J. Hamilton, Sarahi L. Garcia, Brittany S. Brown, Ben O. Oyserman, Francisco Moya-Flores, Stefan Bertilsson, Rex R. Malmstrom, Katrina T. Forest, Katherine D. McMahon
Publié 2017

Lifestyle and Horizontal Gene Transfer-Mediated Evolution of <named-content content-type="genus-species">Mucispirillum schaedleri</named-content>, a Core Member of the Murine Gut M...

par Alexander Loy, Carina Pfann, Michaela Steinberger, Buck Hanson, Simone Herp, Sandrine Brugiroux, João Carlos Gomes Neto, Mark V. Boekschoten, Clarissa Schwab, Tim Urich, Amanda E. Ramer-Tait, Thomas Rattei, Bärbel Stecher, David Berry
Publié 2017

Deconstructing the Soil Microbiome into Reduced-Complexity Functional Modules

par Dan Naylor, Sarah Fansler, Colin Brislawn, William C. Nelson, Kirsten S. Hofmockel, Janet K. Jansson, Ryan McClure
Publié 2020

The Signal and the Noise: Characteristics of Antisense RNA in Complex Microbial Communities

par Thomas Yssing Michaelsen, Jakob Brandt, Caitlin Margaret Singleton, Rasmus Hansen Kirkegaard, Johanna Wiesinger, Nicola Segata, Mads Albertsen
Publié 2020

Long-Term Transcriptional Activity at Zero Growth of a Cosmopolitan Rare Biosphere Member

par Bela Hausmann, Claus Pelikan, Thomas Rattei, Alexander Loy, Michael Pester
Publié 2019

Compositional and Functional Differences in the Human Gut Microbiome Correlate with Clinical Outcome following Infection with Wild-Type <named-content content-type="genus-species">...

par Yan Zhang, Arthur Brady, Cheron Jones, Yang Song, Thomas C. Darton, Claire Jones, Christoph J. Blohmke, Andrew J. Pollard, Laurence S. Magder, Alessio Fasano, Marcelo B. Sztein, Claire M. Fraser
Publié 2018

A k-mer based approach for classifying viruses without taxonomy identifies viral associations in human autism and plant microbiomes

par Benjamin J. Garcia, Ramanuja Simha, Michael Garvin, Anna Furches, Piet Jones, Joao G.F.M. Gazolla, P. Doug Hyatt, Christopher W. Schadt, Dale Pelletier, Daniel Jacobson
Publié 2021

The Trait Repertoire Enabling Cyanobacteria to Bloom Assessed through Comparative Genomic Complexity and Metatranscriptomics

par Huansheng Cao, Yohei Shimura, Morgan M. Steffen, Zhou Yang, Jingrang Lu, Allen Joel, Landon Jenkins, Masanobu Kawachi, Yanbin Yin, Ferran Garcia-Pichel
Publié 2020

Uncultured Microbial Phyla Suggest Mechanisms for Multi-Thousand-Year Subsistence in Baltic Sea Sediments

par Jordan T. Bird, Eric D. Tague, Laura Zinke, Jenna M. Schmidt, Andrew D. Steen, Brandi Reese, Ian P. G. Marshall, Gordon Webster, Andrew Weightman, Hector F. Castro, Shawn R. Campagna, Karen G. Lloyd
Publié 2019

Comparative Fungal Community Analyses Using Metatranscriptomics and Internal Transcribed Spacer Amplicon Sequencing from Norway Spruce

par Andreas N. Schneider, John Sundh, Görel Sundström, Kerstin Richau, Nicolas Delhomme, Manfred Grabherr, Vaughan Hurry, Nathaniel R. Street
Publié 2021

Transcriptionally Active Lung Microbiome and Its Association with Bacterial Biomass and Host Inflammatory Status

par Lili Ren, Rongbao Zhang, Jian Rao, Yan Xiao, Zhao Zhang, Bin Yang, Depan Cao, Hui Zhong, Pu Ning, Ying Shang, Mingkun Li, Zhancheng Gao, Jianwei Wang
Publié 2018

The Who, Why, and How of Small-Molecule Production in Invertebrate Microbiomes: Basic Insights Fueling Drug Discovery

par Jason C. Kwan
Publié 2018

The Baltic Sea Virome: Diversity and Transcriptional Activity of DNA and RNA Viruses

par Lisa Zeigler Allen, John P. McCrow, Karolina Ininbergs, Christopher L. Dupont, Jonathan H. Badger, Jeffery M. Hoffman, Martin Ekman, Andrew E. Allen, Birgitta Bergman, J. Craig Venter
Publié 2017

Heterospecific Neighbor Plants Impact Root Microbiome Diversity and Molecular Function of Root Fungi

par Hui-Ling Liao, Hui-Ling Liao, Gregory Bonito, Khalid Hameed, Steven H. Wu, Ko-Hsuan Chen, Ko-Hsuan Chen, Jesse Labbé, Jesse Labbé, Christopher W. Schadt, Gerald A. Tuskan, Francis Martin, Alan Kuo, Kerrie Barry, Igor V. Grigoriev, Igor V. Grigoriev, Rytas Vilgalys
Publié 2021

Metagenomic Identification of Viral Sequences in Laboratory Reagents

par Ashleigh F. Porter, Joanna Cobbin, Ci-Xiu Li, John-Sebastian Eden, Edward C. Holmes
Publié 2021