Correspondence: Spontaneous secondary mutations confound analysis of the essential two-component system WalKR in Staphylococcus aureus

by Ian R. Monk, Benjamin P. Howden, Torsten Seemann, Timothy P. Stinear
Published 2017

Patient-focused pathogen genetic counselling—has the time come?

by Angeline S Ferdinand, Jane S Hocking, Justin T. Denholm, Benjamin P. Howden, Deborah A. Williamson
Published 2021

Complete Bypass of Restriction Systems for Major <named-content content-type="genus-species">Staphylococcus aureus</named-content> Lineages

by Ian R. Monk, Jai J. Tree, Benjamin P. Howden, Timothy P. Stinear, Timothy J. Foster
Published 2015

Erratum for Monk et al., Complete Bypass of Restriction Systems for Major <named-content content-type="genus-species">Staphylococcus aureus</named-content> Lineages

by Ian R. Monk, Jai J. Tree, Benjamin P. Howden, Timothy P. Stinear, Timothy J. Foster
Published 2016

A Phenotypically Silent <italic toggle="yes">vanB2</italic> Operon Carried on a Tn<italic toggle="yes">1549</italic>-Like Element in <named-content content-type="genus-species">Clo...

by Daniel R. Knight, Grace O. Androga, Susan A. Ballard, Benjamin P. Howden, Thomas V. Riley
Published 2016

Comparative Transcriptomic and Functional Assessments of Linezolid-Responsive Small RNA Genes in <named-content content-type="genus-species">Staphylococcus aureus</named-content>

by Wei Gao, Romain Guérillot, Ya Hsun Lin, Jai Tree, Marie Beaume, Patrice François, Ian R. Monk, Torsten Seemann, Jacques Schrenzel, Benjamin P. Howden, Timothy P. Stinear
Published 2020

Mining the Methylome Reveals Extensive Diversity in <named-content content-type="genus-species">Staphylococcus epidermidis</named-content> Restriction Modification

by Jean Y. H. Lee, Glen P. Carter, Sacha J. Pidot, Romain Guérillot, Torsten Seemann, Anders Gonçalves da Silva, Timothy J. Foster, Benjamin P. Howden, Timothy P. Stinear, Ian R. Monk
Published 2019

Genomic Insights to Control the Emergence of Vancomycin-Resistant Enterococci

by Benjamin P. Howden, Kathryn E. Holt, Margaret M. C. Lam, Torsten Seemann, Susan Ballard, Geoffrey W. Coombs, Steven Y. C. Tong, M. Lindsay Grayson, Paul D. R. Johnson, Timothy P. Stinear
Published 2013

Convergent Evolution Driven by Rifampin Exacerbates the Global Burden of Drug-Resistant <named-content content-type="genus-species">Staphylococcus aureus</named-content>

by Romain Guérillot, Anders Gonçalves da Silva, Ian Monk, Stefano Giulieri, Takehiro Tomita, Eloise Alison, Jessica Porter, Sacha Pidot, Wei Gao, Anton Y. Peleg, Torsten Seemann, Timothy P. Stinear, Benjamin P. Howden
Published 2018

Two novel point mutations in clinical Staphylococcus aureus reduce linezolid susceptibility and switch on the stringent response to promote persistent infection.

by Wei Gao, Kyra Chua, John K Davies, Hayley J Newton, Torsten Seemann, Paul F Harrison, Natasha E Holmes, Hyun-Woo Rhee, Jong-In Hong, Elizabeth L Hartland, Timothy P Stinear, Benjamin P Howden
Published 2010

Reconstruction of the Genomes of Drug-Resistant Pathogens for Outbreak Investigation through Metagenomic Sequencing

by Andre Mu, Jason C. Kwong, Nicole S. Isles, Anders Gonçalves da Silva, Mark B. Schultz, Susan A. Ballard, Courtney R. Lane, Glen P. Carter, Deborah A. Williamson, Torsten Seemann, Timothy P. Stinear, Benjamin P. Howden
Published 2019

Convergent Adaptation in the Dominant Global Hospital Clone ST239 of Methicillin-Resistant <named-content content-type="genus-species">Staphylococcus aureus</named-content>

by Sarah L. Baines, Kathryn E. Holt, Mark B. Schultz, Torsten Seemann, Brian O. Howden, Slade O. Jensen, Sebastiaan J. van Hal, Geoffrey W. Coombs, Neville Firth, David R. Powell, Timothy P. Stinear, Benjamin P. Howden
Published 2015

Comprehensive Genomic Investigation of Adaptive Mutations Driving the Low-Level Oxacillin Resistance Phenotype in <named-content content-type="genus-species">Staphylococcus aureus<...

by Stefano G. Giulieri, Romain Guérillot, Jason C. Kwong, Ian R. Monk, Ashleigh S. Hayes, Diane Daniel, Sarah Baines, Norelle L. Sherry, Natasha E. Holmes, Peter Ward, Wei Gao, Torsten Seemann, Timothy P. Stinear, Benjamin P. Howden
Published 2020

Bridging of Neisseria gonorrhoeae lineages across sexual networks in the HIV pre-exposure prophylaxis era

by Deborah A. Williamson, Eric P. F. Chow, Claire L. Gorrie, Torsten Seemann, Danielle J. Ingle, Nasra Higgins, Marion Easton, George Taiaroa, Yonatan H. Grad, Jason C. Kwong, Christopher K. Fairley, Marcus Y. Chen, Benjamin P. Howden
Published 2019

Evolution of multidrug resistance during Staphylococcus aureus infection involves mutation of the essential two component regulator WalKR.

by Benjamin P Howden, Christopher R E McEvoy, David L Allen, Kyra Chua, Wei Gao, Paul F Harrison, Jan Bell, Geoffrey Coombs, Vicki Bennett-Wood, Jessica L Porter, Roy Robins-Browne, John K Davies, Torsten Seemann, Timothy P Stinear
Published 2011

Evolutionary dynamics of multidrug resistant Salmonella enterica serovar 4,[5],12:i:- in Australia

by Danielle J. Ingle, Rebecca L. Ambrose, Sarah L. Baines, Sebastian Duchene, Anders Gonçalves da Silva, Darren Y. J. Lee, Miriam Jones, Mary Valcanis, George Taiaroa, Susan A. Ballard, Martyn D. Kirk, Benjamin P. Howden, Jaclyn S. Pearson, Deborah A. Williamson
Published 2021

Microbe-Metabolite Associations Linked to the Rebounding Murine Gut Microbiome Postcolonization with Vancomycin-Resistant <named-content content-type="genus-species">Enterococcus f...

by Andre Mu, Glen P. Carter, Lucy Li, Nicole S. Isles, Alison F. Vrbanac, James T. Morton, Alan K. Jarmusch, David P. De Souza, Vinod K. Narayana, Komal Kanojia, Brunda Nijagal, Malcolm J. McConville, Rob Knight, Benjamin P. Howden, Timothy P. Stinear
Published 2020

Tracking the COVID-19 pandemic in Australia using genomics

by Torsten Seemann, Courtney R. Lane, Norelle L. Sherry, Sebastian Duchene, Anders Gonçalves da Silva, Leon Caly, Michelle Sait, Susan A. Ballard, Kristy Horan, Mark B. Schultz, Tuyet Hoang, Marion Easton, Sally Dougall, Timothy P. Stinear, Julian Druce, Mike Catton, Brett Sutton, Annaliese van Diemen, Charles Alpren, Deborah A. Williamson, Benjamin P. Howden
Published 2020

Population genomics provides insights into the evolution and adaptation to humans of the waterborne pathogen Mycobacterium kansasii

by Tao Luo, Peng Xu, Yangyi Zhang, Jessica L. Porter, Marwan Ghanem, Qingyun Liu, Yuan Jiang, Jing Li, Qing Miao, Bijie Hu, Benjamin P. Howden, Janet A. M. Fyfe, Maria Globan, Wencong He, Ping He, Yiting Wang, Houming Liu, Howard E. Takiff, Yanlin Zhao, Xinchun Chen, Qichao Pan, Marcel A. Behr, Timothy P. Stinear, Qian Gao
Published 2021

Key parameters for genomics-based real-time detection and tracking of multidrug-resistant bacteria: a systematic analysis

by Claire L Gorrie, PhD, Anders Gonçalves Da Silva, PhD, Danielle J Ingle, PhD, Charlie Higgs, BSc, Torsten Seemann, PhD, Timothy P Stinear, ProfPhD, Deborah A Williamson, ProfPhD, Jason C Kwong, PhD, M Lindsay Grayson, MD, Norelle L Sherry, MBBS, Benjamin P Howden, ProfPhD
Published 2021