Genomic Diversity and Antimicrobial Resistance of Haemophilus Colonizing the Airways of Young Children with Cystic Fibrosis

par Stephen C. Watts, Louise M. Judd, Rosemary Carzino, Sarath Ranganathan, Kathryn E. Holt
Publié 2021

Direct Nanopore Sequencing of mRNA Reveals Landscape of Transcript Isoforms in Apicomplexan Parasites

par V. Vern Lee, Louise M. Judd, Aaron R. Jex, Kathryn E. Holt, Christopher J. Tonkin, Stuart A. Ralph
Publié 2021

A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex

par Margaret M. C. Lam, Ryan R. Wick, Stephen C. Watts, Louise T. Cerdeira, Kelly L. Wyres, Kathryn E. Holt
Publié 2021

A Salmonella Typhimurium-Typhi genomic chimera: a model to study Vi polysaccharide capsule function in vivo.

par Angela M Jansen, Lindsay J Hall, Simon Clare, David Goulding, Kathryn E Holt, Andrew J Grant, Piero Mastroeni, Gordon Dougan, Robert A Kingsley
Publié 2011

Genomic Insights to Control the Emergence of Vancomycin-Resistant Enterococci

par Benjamin P. Howden, Kathryn E. Holt, Margaret M. C. Lam, Torsten Seemann, Susan Ballard, Geoffrey W. Coombs, Steven Y. C. Tong, M. Lindsay Grayson, Paul D. R. Johnson, Timothy P. Stinear
Publié 2013

A bioinformatic strategy for the detection, classification and analysis of bacterial autotransporters.

par Nermin Celik, Chaille T Webb, Denisse L Leyton, Kathryn E Holt, Eva Heinz, Rebecca Gorrell, Terry Kwok, Thomas Naderer, Richard A Strugnell, Terence P Speed, Rohan D Teasdale, Vladimir A Likić, Trevor Lithgow
Publié 2012

An extended genotyping framework for Salmonella enterica serovar Typhi, the cause of human typhoid

par Vanessa K. Wong, Stephen Baker, Thomas R. Connor, Derek Pickard, Andrew J. Page, Jayshree Dave, Niamh Murphy, Richard Holliman, Armine Sefton, Michael Millar, Zoe A. Dyson, Gordon Dougan, Kathryn E. Holt, International Typhoid Consortium
Publié 2016

Convergent Adaptation in the Dominant Global Hospital Clone ST239 of Methicillin-Resistant <named-content content-type="genus-species">Staphylococcus aureus</named-content>

par Sarah L. Baines, Kathryn E. Holt, Mark B. Schultz, Torsten Seemann, Brian O. Howden, Slade O. Jensen, Sebastiaan J. van Hal, Geoffrey W. Coombs, Neville Firth, David R. Powell, Timothy P. Stinear, Benjamin P. Howden
Publié 2015

Multiple introductions of multidrug-resistant typhoid associated with acute infection and asymptomatic carriage, Kenya

par Samuel Kariuki, Zoe A Dyson, Cecilia Mbae, Ronald Ngetich, Susan M Kavai, Celestine Wairimu, Stephen Anyona, Naomi Gitau, Robert Sanaya Onsare, Beatrice Ongandi, Sebastian Duchene, Mohamed Ali, John David Clemens, Kathryn E Holt, Gordon Dougan
Publié 2021

Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei

par Jane Hawkey, Kalani Paranagama, Kate S. Baker, Rebecca J. Bengtsson, François-Xavier Weill, Nicholas R. Thomson, Stephen Baker, Louise Cerdeira, Zamin Iqbal, Martin Hunt, Danielle J. Ingle, Timothy J. Dallman, Claire Jenkins, Deborah A. Williamson, Kathryn E. Holt
Publié 2021

Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination

par Margaret M. C. Lam, Kelly L. Wyres, Sebastian Duchêne, Ryan R. Wick, Louise M. Judd, Yunn-Hwen Gan, Chu-Han Hoh, Sophia Archuleta, James S. Molton, Shirin Kalimuddin, Tse Hsien Koh, Virginie Passet, Sylvain Brisse, Kathryn E. Holt
Publié 2018

Neonatal genetics of gene expression reveal potential origins of autoimmune and allergic disease risk

par Qin Qin Huang, Howard H. F. Tang, Shu Mei Teo, Danny Mok, Scott C. Ritchie, Artika P. Nath, Marta Brozynska, Agus Salim, Andrew Bakshi, Barbara J. Holt, Chiea Chuen Khor, Peter D. Sly, Patrick G. Holt, Kathryn E. Holt, Michael Inouye
Publié 2020

Genome and Transcriptome Adaptation Accompanying Emergence of the Definitive Type 2 Host-Restricted <named-content content-type="genus-species">Salmonella enterica</named-content>...

par Robert A. Kingsley, Sally Kay, Thomas Connor, Lars Barquist, Leanne Sait, Kathryn E. Holt, Karthi Sivaraman, Thomas Wileman, David Goulding, Simon Clare, Christine Hale, Aswin Seshasayee, Simon Harris, Nicholas R. Thomson, Paul Gardner, Wolfgang Rabsch, Paul Wigley, Tom Humphrey, Julian Parkhill, Gordon Dougan
Publié 2013

A global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at pathogenwatch

par Silvia Argimón, Corin A. Yeats, Richard J. Goater, Khalil Abudahab, Benjamin Taylor, Anthony Underwood, Leonor Sánchez-Busó, Vanessa K. Wong, Zoe A. Dyson, Satheesh Nair, Se Eun Park, Florian Marks, Andrew J. Page, Jacqueline A. Keane, Stephen Baker, Kathryn E. Holt, Gordon Dougan, David M. Aanensen
Publié 2021

Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei

par Hao Chung The, Christine Boinett, Duy Pham Thanh, Claire Jenkins, Francois-Xavier Weill, Benjamin P. Howden, Mary Valcanis, Niall De Lappe, Martin Cormican, Sonam Wangchuk, Ladaporn Bodhidatta, Carl J. Mason, To Nguyen Thi Nguyen, Tuyen Ha Thanh, Vinh Phat Voong, Vu Thuy Duong, Phu Huong Lan Nguyen, Paul Turner, Ryan Wick, Pieter-Jan Ceyssens, Guy Thwaites, Kathryn E. Holt, Nicholas R. Thomson, Maia A. Rabaa, Stephen Baker
Publié 2019

Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain

par Amandine Perrin, Elise Larsonneur, Ainsley C. Nicholson, David J. Edwards, Kristin M. Gundlach, Anne M. Whitney, Christopher A. Gulvik, Melissa E. Bell, Olaya Rendueles, Jean Cury, Perrine Hugon, Dominique Clermont, Vincent Enouf, Vladimir Loparev, Phalasy Juieng, Timothy Monson, David Warshauer, Lina I. Elbadawi, Maroya Spalding Walters, Matthew B. Crist, Judith Noble-Wang, Gwen Borlaug, Eduardo P. C. Rocha, Alexis Criscuolo, Marie Touchon, Jeffrey P. Davis, Kathryn E. Holt, John R. McQuiston, Sylvain Brisse
Publié 2017

Burden of enteric fever at three urban sites in Africa and Asia: a multicentre population-based study

par James E Meiring, DPhil, Mila Shakya, MPH, Farhana Khanam, MPhil, Merryn Voysey, DPhil, Maile T Phillips, MS, Susan Tonks, BSc, Deus Thindwa, MSc, Thomas C Darton, DPhil, Sabina Dongol, DPhil, Abilasha Karkey, DPhil, K Zaman, PhD, Stephen Baker, DPhil, Christiane Dolecek, MD, Sarah J Dunstan, PhD, Gordon Dougan, DPhil, Kathryn E Holt, PhD, Robert S Heyderman, PhD, Firdausi Qadri, PhD, Virginia E Pitzer, ScD, Buddha Basnyat, FRCPE, Melita A Gordon, MD, John Clemens, MD, Andrew J Pollard, FMedSci
Publié 2021

The phylogeography and incidence of multi-drug resistant typhoid fever in sub-Saharan Africa

par Se Eun Park, Duy Thanh Pham, Christine Boinett, Vanessa K. Wong, Gi Deok Pak, Ursula Panzner, Ligia Maria Cruz Espinoza, Vera von Kalckreuth, Justin Im, Heidi Schütt-Gerowitt, John A. Crump, Robert F. Breiman, Yaw Adu-Sarkodie, Ellis Owusu-Dabo, Raphaël Rakotozandrindrainy, Abdramane Bassiahi Soura, Abraham Aseffa, Nagla Gasmelseed, Karen H. Keddy, Jürgen May, Amy Gassama Sow, Peter Aaby, Holly M. Biggs, Julian T. Hertz, Joel M. Montgomery, Leonard Cosmas, Beatrice Olack, Barry Fields, Nimako Sarpong, Tsiriniaina Jean Luco Razafindrabe, Tiana Mirana Raminosoa, Leon Parfait Kabore, Emmanuel Sampo, Mekonnen Teferi, Biruk Yeshitela, Muna Ahmed El Tayeb, Arvinda Sooka, Christian G. Meyer, Ralf Krumkamp, Denise Myriam Dekker, Anna Jaeger, Sven Poppert, Adama Tall, Aissatou Niang, Morten Bjerregaard-Andersen, Sandra Valborg Løfberg, Hye Jin Seo, Hyon Jin Jeon, Jessica Fung Deerin, Jinkyung Park, Frank Konings, Mohammad Ali, John D. Clemens, Peter Hughes, Juliet Nsimire Sendagala, Tobias Vudriko, Robert Downing, Usman N. Ikumapayi, Grant A. Mackenzie, Stephen Obaro, Silvia Argimon, David M. Aanensen, Andrew Page, Jacqueline A. Keane, Sebastian Duchene, Zoe Dyson, Kathryn E. Holt, Gordon Dougan, Florian Marks, Stephen Baker
Publié 2018