HapTree: a novel Bayesian framework for single individual polyplotyping using NGS data.

por Emily Berger, Deniz Yorukoglu, Jian Peng, Bonnie Berger
Publicado 2014

Multicoil2: predicting coiled coils and their oligomerization states from sequence in the twilight zone.

por Jason Trigg, Karl Gutwin, Amy E Keating, Bonnie Berger
Publicado 2011

Improved haplotype inference by exploiting long-range linking and allelic imbalance in RNA-seq datasets

por Emily Berger, Deniz Yorukoglu, Lillian Zhang, Sarah K. Nyquist, Alex K. Shalek, Manolis Kellis, Ibrahim Numanagić, Bonnie Berger
Publicado 2020

Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes

por Ibrahim Numanagić, Salem Malikić, Michael Ford, Xiang Qin, Lorraine Toji, Milan Radovich, Todd C. Skaar, Victoria M. Pratt, Bonnie Berger, Steve Scherer, S. Cenk Sahinalp
Publicado 2018

Author Correction: Truly privacy-preserving federated analytics for precision medicine with multiparty homomorphic encryption

por David Froelicher, Juan R. Troncoso-Pastoriza, Jean Louis Raisaro, Michel A. Cuendet, Joao Sa Sousa, Hyunghoon Cho, Bonnie Berger, Jacques Fellay, Jean-Pierre Hubaux
Publicado 2021