Uniform Manifold Approximation and Projection (UMAP) Reveals Composite Patterns and Resolves Visualization Artifacts in Microbiome Data

by George Armstrong, Cameron Martino, Gibraan Rahman, Antonio Gonzalez, Yoshiki Vázquez-Baeza, Gal Mishne, Rob Knight
Published 2021

A Novel Sparse Compositional Technique Reveals Microbial Perturbations

by Cameron Martino, James T. Morton, Clarisse A. Marotz, Luke R. Thompson, Anupriya Tripathi, Rob Knight, Karsten Zengler
Published 2019

Clean room microbiome complexity impacts planetary protection bioburden

by Ryan Hendrickson, Camilla Urbaniak, Jeremiah J. Minich, Heidi S. Aronson, Cameron Martino, Ramunas Stepanauskas, Rob Knight, Kasthuri Venkateswaran
Published 2021

Intermittent Hypoxia and Hypercapnia Alter Diurnal Rhythms of Luminal Gut Microbiome and Metabolome

by Celeste Allaband, Amulya Lingaraju, Cameron Martino, Baylee Russell, Anupriya Tripathi, Orit Poulsen, Ana Carolina Dantas Machado, Dan Zhou, Jin Xue, Emmanuel Elijah, Atul Malhotra, Pieter C. Dorrestein, Rob Knight, Gabriel G. Haddad, Amir Zarrinpar
Published 2021

Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome

by Bryn C. Taylor, Franck Lejzerowicz, Marion Poirel, Justin P. Shaffer, Lingjing Jiang, Alexander Aksenov, Nicole Litwin, Gregory Humphrey, Cameron Martino, Sandrine Miller-Montgomery, Pieter C. Dorrestein, Patrick Veiga, Se Jin Song, Daniel McDonald, Muriel Derrien, Rob Knight
Published 2020

Nutrition and the Gut Microbiota in 10- to 18-Month-Old Children Living in Urban Slums of Mumbai, India

by Samantha L. Huey, Lingjing Jiang, Marcus W. Fedarko, Daniel McDonald, Cameron Martino, Farhana Ali, David G. Russell, Shobha A. Udipi, Aparna Thorat, Varsha Thakker, Padmini Ghugre, R. D. Potdar, Harsha Chopra, Kripa Rajagopalan, Jere D. Haas, Julia L. Finkelstein, Rob Knight, Saurabh Mehta
Published 2020

EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets

by Kalen Cantrell, Marcus W. Fedarko, Gibraan Rahman, Daniel McDonald, Yimeng Yang, Thant Zaw, Antonio Gonzalez, Stefan Janssen, Mehrbod Estaki, Niina Haiminen, Kristen L. Beck, Qiyun Zhu, Erfan Sayyari, James T. Morton, George Armstrong, Anupriya Tripathi, Julia M. Gauglitz, Clarisse Marotz, Nathaniel L. Matteson, Cameron Martino, Jon G. Sanders, Anna Paola Carrieri, Se Jin Song, Austin D. Swafford, Pieter C. Dorrestein, Kristian G. Andersen, Laxmi Parida, Ho-Cheol Kim, Yoshiki Vázquez-Baeza, Rob Knight
Published 2021