Molecular inter-kingdom interactions of endophytes isolated from Lychnophora ericoides

por Andrés M. Caraballo-Rodríguez, Pieter C. Dorrestein, Monica T. Pupo
Publicado 2017

Interspecies Interactions Stimulate Diversification of the <named-content content-type="genus-species">Streptomyces coelicolor</named-content> Secreted Metabolome

por Matthew F. Traxler, Jeramie D. Watrous, Theodore Alexandrov, Pieter C. Dorrestein, Roberto Kolter
Publicado 2013

Nonribosomal Peptides, Key Biocontrol Components for <named-content content-type="genus-species">Pseudomonas fluorescens</named-content> In5, Isolated from a Greenlandic Suppressiv...

por Charlotte F. Michelsen, Jeramie Watrous, Mikkel A. Glaring, Roland Kersten, Nobuhiro Koyama, Pieter C. Dorrestein, Peter Stougaard
Publicado 2015

Imaging mass spectrometry and MS/MS molecular networking reveals chemical interactions among cuticular bacteria and pathogenic fungi associated with fungus-growing ants

por Cristopher A. Boya P., Hermógenes Fernández-Marín, Luis C. Mejía, Carmenza Spadafora, Pieter C. Dorrestein, Marcelino Gutiérrez
Publicado 2017

Metabolic Fingerprints from the Human Oral Microbiome Reveal a Vast Knowledge Gap of Secreted Small Peptidic Molecules

por Anna Edlund, Neha Garg, Hosein Mohimani, Alexey Gurevich, Xuesong He, Wenyuan Shi, Pieter C. Dorrestein, Jeffrey S. McLean
Publicado 2017

Virulence as a Side Effect of Interspecies Interaction in <italic toggle="yes">Vibrio</italic> Coral Pathogens

por Esther Rubio-Portillo, Ana B. Martin-Cuadrado, Andrés M. Caraballo-Rodríguez, Forest Rohwer, Pieter C. Dorrestein, Josefa Antón
Publicado 2020

Significance estimation for large scale metabolomics annotations by spectral matching

por Kerstin Scheubert, Franziska Hufsky, Daniel Petras, Mingxun Wang, Louis-Félix Nothias, Kai Dührkop, Nuno Bandeira, Pieter C. Dorrestein, Sebastian Böcker
Publicado 2017

Multi-omics Analysis of Periodontal Pocket Microbial Communities Pre- and Posttreatment

por Katy J. Califf, Karen Schwarzberg-Lipson, Neha Garg, Sean M. Gibbons, J. Gregory Caporaso, Jørgen Slots, Chloe Cohen, Pieter C. Dorrestein, Scott T. Kelley
Publicado 2017

Dereplication of microbial metabolites through database search of mass spectra

por Hosein Mohimani, Alexey Gurevich, Alexander Shlemov, Alla Mikheenko, Anton Korobeynikov, Liu Cao, Egor Shcherbin, Louis-Felix Nothias, Pieter C. Dorrestein, Pavel A. Pevzner
Publicado 2018

Identification of the Bacterial Biosynthetic Gene Clusters of the Oral Microbiome Illuminates the Unexplored Social Language of Bacteria during Health and Disease

por Gajender Aleti, Jonathon L. Baker, Xiaoyu Tang, Ruth Alvarez, Márcia Dinis, Nini C. Tran, Alexey V. Melnik, Cuncong Zhong, Madeleine Ernst, Pieter C. Dorrestein, Anna Edlund
Publicado 2019

An Integrated Metabolomic and Genomic Mining Workflow To Uncover the Biosynthetic Potential of Bacteria

por Maria Maansson, Nikolaj G. Vynne, Andreas Klitgaard, Jane L. Nybo, Jette Melchiorsen, Don D. Nguyen, Laura M. Sanchez, Nadine Ziemert, Pieter C. Dorrestein, Mikael R. Andersen, Lone Gram
Publicado 2016

Evaluating Organism-Wide Changes in the Metabolome and Microbiome following a Single Dose of Antibiotic

por Alison Vrbanac, Kathryn A. Patras, Alan K. Jarmusch, Robert H. Mills, Samuel R. Shing, Robert A. Quinn, Fernando Vargas, David J. Gonzalez, Pieter C. Dorrestein, Rob Knight, Victor Nizet
Publicado 2020

Early-Career Scientists Shaping the World

por Ileana M. Cristea, Pieter C. Dorrestein, Jonathan A. Eisen, Jack A. Gilbert, Julie A. Huber, Janet K. Jansson, Rob Knight, Katherine S. Pollard, Jeroen Raes, Pamela A. Silver, Nicole S. Webster, Jian Xu
Publicado 2019

Metabolome-Informed Microbiome Analysis Refines Metadata Classifications and Reveals Unexpected Medication Transfer in Captive Cheetahs

por Julia M. Gauglitz, James T. Morton, Anupriya Tripathi, Shalisa Hansen, Michele Gaffney, Carolina Carpenter, Kelly C. Weldon, Riya Shah, Amy Parampil, Andrea L. Fidgett, Austin D. Swafford, Rob Knight, Pieter C. Dorrestein
Publicado 2020

Intermittent Hypoxia and Hypercapnia, a Hallmark of Obstructive Sleep Apnea, Alters the Gut Microbiome and Metabolome

por Anupriya Tripathi, Alexey V. Melnik, Jin Xue, Orit Poulsen, Michael J. Meehan, Gregory Humphrey, Lingjing Jiang, Gail Ackermann, Daniel McDonald, Dan Zhou, Rob Knight, Pieter C. Dorrestein, Gabriel G. Haddad
Publicado 2018

Intermittent Hypoxia and Hypercapnia Reproducibly Change the Gut Microbiome and Metabolome across Rodent Model Systems

por Anupriya Tripathi, Zhenjiang Zech Xu, Jin Xue, Orit Poulsen, Antonio Gonzalez, Gregory Humphrey, Michael J. Meehan, Alexey V. Melnik, Gail Ackermann, Dan Zhou, Atul Malhotra, Gabriel G. Haddad, Pieter C. Dorrestein, Rob Knight
Publicado 2019

Intermittent Hypoxia and Hypercapnia Alter Diurnal Rhythms of Luminal Gut Microbiome and Metabolome

por Celeste Allaband, Amulya Lingaraju, Cameron Martino, Baylee Russell, Anupriya Tripathi, Orit Poulsen, Ana Carolina Dantas Machado, Dan Zhou, Jin Xue, Emmanuel Elijah, Atul Malhotra, Pieter C. Dorrestein, Rob Knight, Gabriel G. Haddad, Amir Zarrinpar
Publicado 2021

Balance Trees Reveal Microbial Niche Differentiation

por James T. Morton, Jon Sanders, Robert A. Quinn, Daniel McDonald, Antonio Gonzalez, Yoshiki Vázquez-Baeza, Jose A. Navas-Molina, Se Jin Song, Jessica L. Metcalf, Embriette R. Hyde, Manuel Lladser, Pieter C. Dorrestein, Rob Knight
Publicado 2017

High-Resolution Longitudinal Dynamics of the Cystic Fibrosis Sputum Microbiome and Metabolome through Antibiotic Therapy

por Ruma Raghuvanshi, Karla Vasco, Yoshiki Vázquez-Baeza, Lingjing Jiang, James T. Morton, Danxun Li, Antonio Gonzalez, Lindsay DeRight Goldasich, Gregory Humphrey, Gail Ackermann, Austin D. Swafford, Douglas Conrad, Rob Knight, Pieter C. Dorrestein, Robert A. Quinn
Publicado 2020

Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome

por Bryn C. Taylor, Franck Lejzerowicz, Marion Poirel, Justin P. Shaffer, Lingjing Jiang, Alexander Aksenov, Nicole Litwin, Gregory Humphrey, Cameron Martino, Sandrine Miller-Montgomery, Pieter C. Dorrestein, Patrick Veiga, Se Jin Song, Daniel McDonald, Muriel Derrien, Rob Knight
Publicado 2020