Molecular inter-kingdom interactions of endophytes isolated from Lychnophora ericoides

par Andrés M. Caraballo-Rodríguez, Pieter C. Dorrestein, Monica T. Pupo
Publié 2017

Interspecies Interactions Stimulate Diversification of the <named-content content-type="genus-species">Streptomyces coelicolor</named-content> Secreted Metabolome

par Matthew F. Traxler, Jeramie D. Watrous, Theodore Alexandrov, Pieter C. Dorrestein, Roberto Kolter
Publié 2013

Nonribosomal Peptides, Key Biocontrol Components for <named-content content-type="genus-species">Pseudomonas fluorescens</named-content> In5, Isolated from a Greenlandic Suppressiv...

par Charlotte F. Michelsen, Jeramie Watrous, Mikkel A. Glaring, Roland Kersten, Nobuhiro Koyama, Pieter C. Dorrestein, Peter Stougaard
Publié 2015

Imaging mass spectrometry and MS/MS molecular networking reveals chemical interactions among cuticular bacteria and pathogenic fungi associated with fungus-growing ants

par Cristopher A. Boya P., Hermógenes Fernández-Marín, Luis C. Mejía, Carmenza Spadafora, Pieter C. Dorrestein, Marcelino Gutiérrez
Publié 2017

Metabolic Fingerprints from the Human Oral Microbiome Reveal a Vast Knowledge Gap of Secreted Small Peptidic Molecules

par Anna Edlund, Neha Garg, Hosein Mohimani, Alexey Gurevich, Xuesong He, Wenyuan Shi, Pieter C. Dorrestein, Jeffrey S. McLean
Publié 2017

Virulence as a Side Effect of Interspecies Interaction in <italic toggle="yes">Vibrio</italic> Coral Pathogens

par Esther Rubio-Portillo, Ana B. Martin-Cuadrado, Andrés M. Caraballo-Rodríguez, Forest Rohwer, Pieter C. Dorrestein, Josefa Antón
Publié 2020

Significance estimation for large scale metabolomics annotations by spectral matching

par Kerstin Scheubert, Franziska Hufsky, Daniel Petras, Mingxun Wang, Louis-Félix Nothias, Kai Dührkop, Nuno Bandeira, Pieter C. Dorrestein, Sebastian Böcker
Publié 2017

Multi-omics Analysis of Periodontal Pocket Microbial Communities Pre- and Posttreatment

par Katy J. Califf, Karen Schwarzberg-Lipson, Neha Garg, Sean M. Gibbons, J. Gregory Caporaso, Jørgen Slots, Chloe Cohen, Pieter C. Dorrestein, Scott T. Kelley
Publié 2017

Dereplication of microbial metabolites through database search of mass spectra

par Hosein Mohimani, Alexey Gurevich, Alexander Shlemov, Alla Mikheenko, Anton Korobeynikov, Liu Cao, Egor Shcherbin, Louis-Felix Nothias, Pieter C. Dorrestein, Pavel A. Pevzner
Publié 2018

Identification of the Bacterial Biosynthetic Gene Clusters of the Oral Microbiome Illuminates the Unexplored Social Language of Bacteria during Health and Disease

par Gajender Aleti, Jonathon L. Baker, Xiaoyu Tang, Ruth Alvarez, Márcia Dinis, Nini C. Tran, Alexey V. Melnik, Cuncong Zhong, Madeleine Ernst, Pieter C. Dorrestein, Anna Edlund
Publié 2019

An Integrated Metabolomic and Genomic Mining Workflow To Uncover the Biosynthetic Potential of Bacteria

par Maria Maansson, Nikolaj G. Vynne, Andreas Klitgaard, Jane L. Nybo, Jette Melchiorsen, Don D. Nguyen, Laura M. Sanchez, Nadine Ziemert, Pieter C. Dorrestein, Mikael R. Andersen, Lone Gram
Publié 2016

Evaluating Organism-Wide Changes in the Metabolome and Microbiome following a Single Dose of Antibiotic

par Alison Vrbanac, Kathryn A. Patras, Alan K. Jarmusch, Robert H. Mills, Samuel R. Shing, Robert A. Quinn, Fernando Vargas, David J. Gonzalez, Pieter C. Dorrestein, Rob Knight, Victor Nizet
Publié 2020

Early-Career Scientists Shaping the World

par Ileana M. Cristea, Pieter C. Dorrestein, Jonathan A. Eisen, Jack A. Gilbert, Julie A. Huber, Janet K. Jansson, Rob Knight, Katherine S. Pollard, Jeroen Raes, Pamela A. Silver, Nicole S. Webster, Jian Xu
Publié 2019

Metabolome-Informed Microbiome Analysis Refines Metadata Classifications and Reveals Unexpected Medication Transfer in Captive Cheetahs

par Julia M. Gauglitz, James T. Morton, Anupriya Tripathi, Shalisa Hansen, Michele Gaffney, Carolina Carpenter, Kelly C. Weldon, Riya Shah, Amy Parampil, Andrea L. Fidgett, Austin D. Swafford, Rob Knight, Pieter C. Dorrestein
Publié 2020

Intermittent Hypoxia and Hypercapnia, a Hallmark of Obstructive Sleep Apnea, Alters the Gut Microbiome and Metabolome

par Anupriya Tripathi, Alexey V. Melnik, Jin Xue, Orit Poulsen, Michael J. Meehan, Gregory Humphrey, Lingjing Jiang, Gail Ackermann, Daniel McDonald, Dan Zhou, Rob Knight, Pieter C. Dorrestein, Gabriel G. Haddad
Publié 2018

Intermittent Hypoxia and Hypercapnia Reproducibly Change the Gut Microbiome and Metabolome across Rodent Model Systems

par Anupriya Tripathi, Zhenjiang Zech Xu, Jin Xue, Orit Poulsen, Antonio Gonzalez, Gregory Humphrey, Michael J. Meehan, Alexey V. Melnik, Gail Ackermann, Dan Zhou, Atul Malhotra, Gabriel G. Haddad, Pieter C. Dorrestein, Rob Knight
Publié 2019

Intermittent Hypoxia and Hypercapnia Alter Diurnal Rhythms of Luminal Gut Microbiome and Metabolome

par Celeste Allaband, Amulya Lingaraju, Cameron Martino, Baylee Russell, Anupriya Tripathi, Orit Poulsen, Ana Carolina Dantas Machado, Dan Zhou, Jin Xue, Emmanuel Elijah, Atul Malhotra, Pieter C. Dorrestein, Rob Knight, Gabriel G. Haddad, Amir Zarrinpar
Publié 2021

Balance Trees Reveal Microbial Niche Differentiation

par James T. Morton, Jon Sanders, Robert A. Quinn, Daniel McDonald, Antonio Gonzalez, Yoshiki Vázquez-Baeza, Jose A. Navas-Molina, Se Jin Song, Jessica L. Metcalf, Embriette R. Hyde, Manuel Lladser, Pieter C. Dorrestein, Rob Knight
Publié 2017

High-Resolution Longitudinal Dynamics of the Cystic Fibrosis Sputum Microbiome and Metabolome through Antibiotic Therapy

par Ruma Raghuvanshi, Karla Vasco, Yoshiki Vázquez-Baeza, Lingjing Jiang, James T. Morton, Danxun Li, Antonio Gonzalez, Lindsay DeRight Goldasich, Gregory Humphrey, Gail Ackermann, Austin D. Swafford, Douglas Conrad, Rob Knight, Pieter C. Dorrestein, Robert A. Quinn
Publié 2020

Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome

par Bryn C. Taylor, Franck Lejzerowicz, Marion Poirel, Justin P. Shaffer, Lingjing Jiang, Alexander Aksenov, Nicole Litwin, Gregory Humphrey, Cameron Martino, Sandrine Miller-Montgomery, Pieter C. Dorrestein, Patrick Veiga, Se Jin Song, Daniel McDonald, Muriel Derrien, Rob Knight
Publié 2020