Defining Microbiome Health through a Host Lens

par Sean M. Gibbons
Publié 2019

The Built Environment Is a Microbial Wasteland

par Sean M. Gibbons
Publié 2016

MICOM: Metagenome-Scale Modeling To Infer Metabolic Interactions in the Gut Microbiota

par Christian Diener, Sean M. Gibbons, Osbaldo Resendis-Antonio
Publié 2020

Meta-analysis of gut microbiome studies identifies disease-specific and shared responses

par Claire Duvallet, Sean M. Gibbons, Thomas Gurry, Rafael A. Irizarry, Eric J. Alm
Publié 2017

Invasive Plants Rapidly Reshape Soil Properties in a Grassland Ecosystem

par Sean M. Gibbons, Ylva Lekberg, Daniel L. Mummey, Naseer Sangwan, Philip W. Ramsey, Jack A. Gilbert
Publié 2017

Disturbance Regimes Predictably Alter Diversity in an Ecologically Complex Bacterial System

par Sean M. Gibbons, Monika Scholz, Alan L. Hutchison, Aaron R. Dinner, Jack A. Gilbert, Maureen L. Coleman
Publié 2016

Non-responder phenotype reveals apparent microbiome-wide antibiotic tolerance in the murine gut

par Christian Diener, Anna C. H. Hoge, Sean M. Kearney, Ulrike Kusebauch, Sushmita Patwardhan, Robert L. Moritz, Susan E. Erdman, Sean M. Gibbons
Publié 2021

Baseline Gut Metagenomic Functional Gene Signature Associated with Variable Weight Loss Responses following a Healthy Lifestyle Intervention in Humans

par Christian Diener, Shizhen Qin, Yong Zhou, Sushmita Patwardhan, Li Tang, Jennifer C. Lovejoy, Andrew T. Magis, Nathan D. Price, Leroy Hood, Sean M. Gibbons
Publié 2021

Multi-omics Analysis of Periodontal Pocket Microbial Communities Pre- and Posttreatment

par Katy J. Califf, Karen Schwarzberg-Lipson, Neha Garg, Sean M. Gibbons, J. Gregory Caporaso, Jørgen Slots, Chloe Cohen, Pieter C. Dorrestein, Scott T. Kelley
Publié 2017

The geometry of clinical labs and wellness states from deeply phenotyped humans

par Anat Zimmer, Yael Korem, Noa Rappaport, Tomasz Wilmanski, Priyanka Baloni, Kathleen Jade, Max Robinson, Andrew T. Magis, Jennifer Lovejoy, Sean M. Gibbons, Leroy Hood, Nathan D. Price
Publié 2021

Sulfur Metabolites Play Key System-Level Roles in Modulating Denitrification

par Anne E. Otwell, Alex V. Carr, Erica L. W. Majumder, Maryann K. Ruiz, Regina L. Wilpiszeski, Linh T. Hoang, Bill Webb, Serdar Turkarslan, Sean M. Gibbons, Dwayne A. Elias, David A. Stahl, Gary Siuzdak, Nitin S. Baliga
Publié 2021

Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities

par Pajau Vangay, Josephine Burgin, Anjanette Johnston, Kristen L. Beck, Daniel C. Berrios, Kai Blumberg, Shane Canon, Patrick Chain, John-Marc Chandonia, Danielle Christianson, Sylvain V. Costes, Joan Damerow, William D. Duncan, Jose Pablo Dundore-Arias, Kjiersten Fagnan, Jonathan M. Galazka, Sean M. Gibbons, David Hays, Judson Hervey, Bin Hu, Bonnie L. Hurwitz, Pankaj Jaiswal, Marcin P. Joachimiak, Linda Kinkel, Joshua Ladau, Stanton L. Martin, Lee Ann McCue, Kayd Miller, Nigel Mouncey, Chris Mungall, Evangelos Pafilis, T. B. K. Reddy, Lorna Richardson, Simon Roux, Lynn M. Schriml, Justin P. Shaffer, Jagadish Chandrabose Sundaramurthi, Luke R. Thompson, Ruth E. Timme, Jie Zheng, Elisha M. Wood-Charlson, Emiley A. Eloe-Fadrosh
Publié 2021

Correction for Vangay et al., “Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities”

par Pajau Vangay, Josephine Burgin, Anjanette Johnston, Kristen L. Beck, Daniel C. Berrios, Kai Blumberg, Shane Canon, Patrick Chain, John-Marc Chandonia, Danielle Christianson, Sylvain V. Costes, Joan Damerow, William D. Duncan, Jose Pablo Dundore-Arias, Kjiersten Fagnan, Jonathan M. Galazka, Sean M. Gibbons, David Hays, Judson Hervey, Bin Hu, Bonnie L. Hurwitz, Pankaj Jaiswal, Marcin P. Joachimiak, Linda Kinkel, Joshua Ladau, Stanton L. Martin, Lee Ann McCue, Kayd Miller, Nigel Mouncey, Chris Mungall, Evangelos Pafilis, T. B. K. Reddy, Lorna Richardson, Simon Roux, Lynn M. Schriml, Justin P. Shaffer, Jagadish Chandrabose Sundaramurthi, Luke R. Thompson, Ruth E. Timme, Jie Zheng, Elisha M. Wood-Charlson, Emiley A. Eloe-Fadrosh
Publié 2021