Scalable steady state analysis of Boolean biological regulatory networks.

by Ferhat Ay, Fei Xu, Tamer Kahveci
Published 2009

Identification of significant chromatin contacts from HiChIP data by FitHiChIP

by Sourya Bhattacharyya, Vivek Chandra, Pandurangan Vijayanand, Ferhat Ay
Published 2019

COVID-19 genetic risk variants are associated with expression of multiple genes in diverse immune cell types

by Benjamin J. Schmiedel, Job Rocha, Cristian Gonzalez-Colin, Sourya Bhattacharyya, Ariel Madrigal, Christian H. Ottensmeier, Ferhat Ay, Vivek Chandra, Pandurangan Vijayanand
Published 2021

17q21 asthma-risk variants switch CTCF binding and regulate IL-2 production by T cells

by Benjamin Joachim Schmiedel, Grégory Seumois, Daniela Samaniego-Castruita, Justin Cayford, Veronique Schulten, Lukas Chavez, Ferhat Ay, Alessandro Sette, Bjoern Peters, Pandurangan Vijayanand
Published 2016

NSD2 overexpression drives clustered chromatin and transcriptional changes in a subset of insulated domains

by Priscillia Lhoumaud, Sana Badri, Javier Rodriguez-Hernaez, Theodore Sakellaropoulos, Gunjan Sethia, Andreas Kloetgen, MacIntosh Cornwell, Sourya Bhattacharyya, Ferhat Ay, Richard Bonneau, Aristotelis Tsirigos, Jane A. Skok
Published 2019

Changes in genome organization of parasite-specific gene families during the Plasmodium transmission stages

by Evelien M. Bunnik, Kate B. Cook, Nelle Varoquaux, Gayani Batugedara, Jacques Prudhomme, Anthony Cort, Lirong Shi, Chiara Andolina, Leila S. Ross, Declan Brady, David A. Fidock, Francois Nosten, Rita Tewari, Photini Sinnis, Ferhat Ay, Jean-Philippe Vert, William Stafford Noble, Karine G. Le Roch
Published 2018