Predicting pathogenic non-coding SVs disrupting the 3D genome in 1646 whole cancer genomes using multiple instance learning

por Marleen M. Nieboer, Luan Nguyen, Jeroen de Ridder
Publicado 2021

Soft skills: an important asset acquired from organizing regional student group activities.

por Jeroen de Ridder, Pieter Meysman, Olugbenga Oluwagbemi, Thomas Abeel
Publicado 2014

Predicting treatment benefit in multiple myeloma through simulation of alternative treatment effects

por Joske Ubels, Pieter Sonneveld, Erik H. van Beers, Annemiek Broijl, Martin H. van Vliet, Jeroen de Ridder
Publicado 2018

The young PI buzz: learning from the organizers of the Junior Principal Investigator Meeting at ISMB-ECCB 2013.

por Jeroen de Ridder, Yana Bromberg, Magali Michaut, Venkata P Satagopam, Manuel Corpas, Geoff MacIntyre, Theodore Alexandrov
Publicado 2013

Insertional mutagenesis and deep profiling reveals gene hierarchies and a Myc/p53-dependent bottleneck in lymphomagenesis.

por Camille A Huser, Kathryn L Gilroy, Jeroen de Ridder, Anna Kilbey, Gillian Borland, Nancy Mackay, Alma Jenkins, Margaret Bell, Pawel Herzyk, Louise van der Weyden, David J Adams, Alistair G Rust, Ewan Cameron, James C Neil
Publicado 2014

A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns

por Wei Jiao, Gurnit Atwal, Paz Polak, Rosa Karlic, Edwin Cuppen, PCAWG Tumor Subtypes and Clinical Translation Working Group, Alexandra Danyi, Jeroen de Ridder, Carla van Herpen, Martijn P. Lolkema, Neeltje Steeghs, Gad Getz, Quaid Morris, Lincoln D. Stein, PCAWG Consortium
Publicado 2020

Mapping and phasing of structural variation in patient genomes using nanopore sequencing

por Mircea Cretu Stancu, Markus J. van Roosmalen, Ivo Renkens, Marleen M. Nieboer, Sjors Middelkamp, Joep de Ligt, Giulia Pregno, Daniela Giachino, Giorgia Mandrile, Jose Espejo Valle-Inclan, Jerome Korzelius, Ewart de Bruijn, Edwin Cuppen, Michael E. Talkowski, Tobias Marschall, Jeroen de Ridder, Wigard P. Kloosterman
Publicado 2017