Identification of functional differences in metabolic networks using comparative genomics and constraint-based models.

par Joshua J Hamilton, Jennifer L Reed
Publié 2012

TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution

par Robin R. Rohwer, Joshua J. Hamilton, Ryan J. Newton, Katherine D. McMahon
Publié 2018

Diagnosing and Predicting Mixed-Culture Fermentations with Unicellular and Guild-Based Metabolic Models

par Matthew J. Scarborough, Joshua J. Hamilton, Elizabeth A. Erb, Timothy J. Donohue, Daniel R. Noguera
Publié 2020

Metatranscriptomic and Thermodynamic Insights into Medium-Chain Fatty Acid Production Using an Anaerobic Microbiome

par Matthew J. Scarborough, Christopher E. Lawson, Joshua J. Hamilton, Timothy J. Donohue, Daniel R. Noguera
Publié 2018

Metabolic network analysis reveals microbial community interactions in anammox granules

par Christopher E. Lawson, Sha Wu, Ananda S. Bhattacharjee, Joshua J. Hamilton, Katherine D. McMahon, Ramesh Goel, Daniel R. Noguera
Publié 2017

Model Communities Hint at Promiscuous Metabolic Linkages between Ubiquitous Free-Living Freshwater Bacteria

par Sarahi L. Garcia, Moritz Buck, Joshua J. Hamilton, Christian Wurzbacher, Hans-Peter Grossart, Katherine D. McMahon, Alexander Eiler
Publié 2018

Design of synthetic human gut microbiome assembly and butyrate production

par Ryan L. Clark, Bryce M. Connors, David M. Stevenson, Susan E. Hromada, Joshua J. Hamilton, Daniel Amador-Noguez, Ophelia S. Venturelli
Publié 2021

Metabolic Network Analysis and Metatranscriptomics Reveal Auxotrophies and Nutrient Sources of the Cosmopolitan Freshwater Microbial Lineage acI

par Joshua J. Hamilton, Sarahi L. Garcia, Brittany S. Brown, Ben O. Oyserman, Francisco Moya-Flores, Stefan Bertilsson, Rex R. Malmstrom, Katrina T. Forest, Katherine D. McMahon
Publié 2017