Assessment of metagenomic assembly using simulated next generation sequencing data.

by Daniel R Mende, Alison S Waller, Shinichi Sunagawa, Aino I Järvelin, Michelle M Chan, Manimozhiyan Arumugam, Jeroen Raes, Peer Bork
Published 2012

Ecological Adaptation and Succession of Human Fecal Microbial Communities in an Automated <i>In Vitro</i> Fermentation System

by Thiyagarajan Gnanasekaran, Juliana Assis Geraldo, David Wilczek Ahrenkiel, Camila Alvarez-Silva, Carmen Saenz, Adnan Khan, Obaida Hanteer, Vithiagaran Gunalan, Kajetan Trost, Thomas Moritz, Manimozhiyan Arumugam
Published 2021

MOCAT: a metagenomics assembly and gene prediction toolkit.

by Jens Roat Kultima, Shinichi Sunagawa, Junhua Li, Weineng Chen, Hua Chen, Daniel R Mende, Manimozhiyan Arumugam, Qi Pan, Binghang Liu, Junjie Qin, Jun Wang, Jun Wang, Peer Bork
Published 2012

Butyrate producing colonic Clostridiales metabolise human milk oligosaccharides and cross feed on mucin via conserved pathways

by Michael Jakob Pichler, Chihaya Yamada, Bashar Shuoker, Camila Alvarez-Silva, Aina Gotoh, Maria Louise Leth, Erwin Schoof, Toshihiko Katoh, Mikiyasu Sakanaka, Takane Katayama, Chunsheng Jin, Niclas G. Karlsson, Manimozhiyan Arumugam, Shinya Fushinobu, Maher Abou Hachem
Published 2020

A Previously Undescribed Highly Prevalent Phage Identified in a Danish Enteric Virome Catalog

by Lore Van Espen, Emilie Glad Bak, Leen Beller, Lila Close, Ward Deboutte, Helene Bæk Juel, Trine Nielsen, Deniz Sinar, Lander De Coninck, Christine Frithioff-Bøjsøe, Cilius Esmann Fonvig, Suganya Jacobsen, Maria Kjærgaard, Maja Thiele, Anthony Fullam, Michael Kuhn, Jens-Christian Holm, Peer Bork, Aleksander Krag, Torben Hansen, Manimozhiyan Arumugam, Jelle Matthijnssens
Published 2021