Analysis of sensitive information leakage in functional genomics signal profiles through genomic deletions

por Arif Harmanci, Mark Gerstein
Publicado 2018

Predicting the frequencies of drug side effects

por Diego Galeano, Shantao Li, Mark Gerstein, Alberto Paccanaro
Publicado 2020

Estimating growth patterns and driver effects in tumor evolution from individual samples

por Leonidas Salichos, William Meyerson, Jonathan Warrell, Mark Gerstein
Publicado 2020

Open access: taking full advantage of the content.

por Philip E Bourne, J Lynn Fink, Mark Gerstein
Publicado 2008

Genomics and privacy: implications of the new reality of closed data for the field.

por Dov Greenbaum, Andrea Sboner, Xinmeng Jasmine Mu, Mark Gerstein
Publicado 2011

A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals

por Jieming Chen, Joel Rozowsky, Timur R. Galeev, Arif Harmanci, Robert Kitchen, Jason Bedford, Alexej Abyzov, Yong Kong, Lynne Regan, Mark Gerstein
Publicado 2016

Using ALoFT to determine the impact of putative loss-of-function variants in protein-coding genes

por Suganthi Balasubramanian, Yao Fu, Mayur Pawashe, Patrick McGillivray, Mike Jin, Jeremy Liu, Konrad J. Karczewski, Daniel G. MacArthur, Mark Gerstein
Publicado 2017

Germline variant burden in cancer genes correlates with age at diagnosis and somatic mutation burden

por Tao Qing, Hussein Mohsen, Michal Marczyk, Yixuan Ye, Tess O’Meara, Hongyu Zhao, Jeffrey P. Townsend, Mark Gerstein, Christos Hatzis, Yuval Kluger, Lajos Pusztai
Publicado 2020

Transcriptional activity and strain-specific history of mouse pseudogenes

por Cristina Sisu, Paul Muir, Adam Frankish, Ian Fiddes, Mark Diekhans, David Thybert, Duncan T. Odom, Paul Flicek, Thomas M. Keane, Tim Hubbard, Jennifer Harrow, Mark Gerstein
Publicado 2020

Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis

por Jethro S. Johnson, Daniel J. Spakowicz, Bo-Young Hong, Lauren M. Petersen, Patrick Demkowicz, Lei Chen, Shana R. Leopold, Blake M. Hanson, Hanako O. Agresta, Mark Gerstein, Erica Sodergren, George M. Weinstock
Publicado 2019

Bayesian structural time series for biomedical sensor data: A flexible modeling framework for evaluating interventions.

por Jason Liu, Daniel J Spakowicz, Garrett I Ash, Rebecca Hoyd, Rohan Ahluwalia, Andrew Zhang, Shaoke Lou, Donghoon Lee, Jing Zhang, Carolyn Presley, Ann Greene, Matthew Stults-Kolehmainen, Laura M Nally, Julien S Baker, Lisa M Fucito, Stuart A Weinzimer, Andrew V Papachristos, Mark Gerstein
Publicado 2021

Correction: Corrigendum: Diverse human extracellular RNAs are widely detected in human plasma

por Jane E. Freedman, Mark Gerstein, Eric Mick, Joel Rozowsky, Daniel Levy, Robert Kitchen, Saumya Das, Ravi Shah, Kirsty Danielson, Lea Beaulieu, Fabio C. P. Navarro, Yaoyu Wang, Timur R. Galeev, Alex Holman, Raymond Y. Kwong, Venkatesh Murthy, Selim E. Tanriverdi, Milka Koupenova, Ekaterina Mikhalev, Kahraman Tanriverdi
Publicado 2016

Diverse human extracellular RNAs are widely detected in human plasma

por Jane E. Freedman, Mark Gerstein, Eric Mick, Joel Rozowsky, Daniel Levy, Robert Kitchen, Saumya Das, Ravi Shah, Kirsty Danielson, Lea Beaulieu, Fabio C. P. Navarro, Yaoyu Wang, Timur R. Galeev, Alex Holman, Raymond Y. Kwong, Venkatesh Murthy, Selim E. Tanriverdi, Milka Koupenova, Ekaterina Mikhalev, Kahraman Tanriverdi
Publicado 2016

An integrative ENCODE resource for cancer genomics

por Jing Zhang, Donghoon Lee, Vineet Dhiman, Peng Jiang, Jie Xu, Patrick McGillivray, Hongbo Yang, Jason Liu, William Meyerson, Declan Clarke, Mengting Gu, Shantao Li, Shaoke Lou, Jinrui Xu, Lucas Lochovsky, Matthew Ung, Lijia Ma, Shan Yu, Qin Cao, Arif Harmanci, Koon-Kiu Yan, Anurag Sethi, Gamze Gürsoy, Michael Rutenberg Schoenberg, Joel Rozowsky, Jonathan Warrell, Prashant Emani, Yucheng T. Yang, Timur Galeev, Xiangmeng Kong, Shuang Liu, Xiaotong Li, Jayanth Krishnan, Yanlin Feng, Juan Carlos Rivera-Mulia, Jessica Adrian, James R Broach, Michael Bolt, Jennifer Moran, Dominic Fitzgerald, Vishnu Dileep, Tingting Liu, Shenglin Mei, Takayo Sasaki, Claudia Trevilla-Garcia, Su Wang, Yanli Wang, Chongzhi Zang, Daifeng Wang, Robert J. Klein, Michael Snyder, David M. Gilbert, Kevin Yip, Chao Cheng, Feng Yue, X. Shirley Liu, Kevin P. White, Mark Gerstein
Publicado 2020