Build the Read: A Hands-On Activity for Introducing Microbiology Students to Next-Generation DNA Sequencing and Bioinformatics

by Guerrino Macori, Angelo Romano, Lucia Decastelli, Paul D. Cotter
Published 2017

Microbiome-based environmental monitoring of a dairy processing facility highlights the challenges associated with low microbial-load samples

by Aoife J. McHugh, Min Yap, Fiona Crispie, Conor Feehily, Colin Hill, Paul D. Cotter
Published 2021

Tracking the Dairy Microbiota from Farm Bulk Tank to Skimmed Milk Powder

by Aoife J. McHugh, Conor Feehily, Mark A. Fenelon, David Gleeson, Colin Hill, Paul D. Cotter
Published 2020

Genome mining for radical SAM protein determinants reveals multiple sactibiotic-like gene clusters.

by Kiera Murphy, Orla O'Sullivan, Mary C Rea, Paul D Cotter, R Paul Ross, Colin Hill
Published 2011

The potency of the broad spectrum bacteriocin, bactofencin A, against staphylococci is highly dependent on primary structure, N-terminal charge and disulphide formation

by Paula M. O’ Connor, Eileen F. O’ Shea, Paul D. Cotter, Colin Hill, R. Paul Ross
Published 2018

Controlled functional expression of the bacteriocins pediocin PA-1 and bactofencin A in Escherichia coli

by Beatriz Mesa-Pereira, Paula M. O’Connor, Mary C. Rea, Paul D. Cotter, Colin Hill, R. Paul Ross
Published 2017

Bactofencin A, a New Type of Cationic Bacteriocin with Unusual Immunity

by Eileen F. O'Shea, Paula M. O'Connor, Orla O'Sullivan, Paul D. Cotter, R. Paul Ross, Colin Hill
Published 2013

Correction for Walsh et al., Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir

by Aaron M. Walsh, Fiona Crispie, Kieran Kilcawley, Orla O’Sullivan, Maurice G. O’Sullivan, Marcus J. Claesson, Paul D. Cotter
Published 2017

Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir

by Aaron M. Walsh, Fiona Crispie, Kieran Kilcawley, Orla O’Sullivan, Maurice G. O’Sullivan, Marcus J. Claesson, Paul D. Cotter
Published 2016

In silico assigned resistance genes confer Bifidobacterium with partial resistance to aminoglycosides but not to β-lactams.

by Fiona Fouhy, Mary O'Connell Motherway, Gerald F Fitzgerald, R Paul Ross, Catherine Stanton, Douwe van Sinderen, Paul D Cotter
Published 2013

Targeting the microbiota to address diet-induced obesity: a time dependent challenge.

by Siobhan F Clarke, Eileen F Murphy, Orla O'Sullivan, R Paul Ross, Paul W O'Toole, Fergus Shanahan, Paul D Cotter
Published 2013

Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome

by Edoardo Pasolli, Francesca De Filippis, Italia E. Mauriello, Fabio Cumbo, Aaron M. Walsh, John Leech, Paul D. Cotter, Nicola Segata, Danilo Ercolini
Published 2020

Listeriolysin S, a novel peptide haemolysin associated with a subset of lineage I Listeria monocytogenes.

by Paul D Cotter, Lorraine A Draper, Elaine M Lawton, Karen M Daly, David S Groeger, Pat G Casey, R Paul Ross, Colin Hill
Published 2008

Dairy Products and Dairy-Processing Environments as a Reservoir of Antibiotic Resistance and Quorum-Quenching Determinants as Revealed through Functional Metagenomics

by Elena A. Alexa (Oniciuc), Calum J. Walsh, Laura M. Coughlan, Amal Awad, Cezara A. Simon, Lorena Ruiz, Fiona Crispie, Paul D. Cotter, Avelino Alvarez-Ordóñez
Published 2020

Microbial Composition of Human Appendices from Patients following Appendectomy

by Caitriona M. Guinane, Amany Tadrous, Fiona Fouhy, C. Anthony Ryan, Eugene M. Dempsey, Brendan Murphy, Emmet Andrews, Paul D. Cotter, Catherine Stanton, R. Paul Ross
Published 2013

The effect of feeding Bt MON810 maize to pigs for 110 days on intestinal microbiota.

by Stefan G Buzoianu, Maria C Walsh, Mary C Rea, Orla O'Sullivan, Fiona Crispie, Paul D Cotter, R Paul Ross, Gillian E Gardiner, Peadar G Lawlor
Published 2012

Influence of the Intestinal Microbiota on Colonization Resistance to <italic toggle="yes">Salmonella</italic> and the Shedding Pattern of Naturally Exposed Pigs

by Héctor Argüello, Jordi Estellé, Finola C. Leonard, Fiona Crispie, Paul D. Cotter, Orla O’Sullivan, Helen Lynch, Kavita Walia, Geraldine Duffy, Peadar G. Lawlor, Gillian E. Gardiner
Published 2019

Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants

by John Leech, Raul Cabrera-Rubio, Aaron M. Walsh, Guerrino Macori, Calum J. Walsh, Wiley Barton, Laura Finnegan, Fiona Crispie, Orla O’Sullivan, Marcus J. Claesson, Paul D. Cotter
Published 2020

Evaluation of methods for the reduction of contaminating host reads when performing shotgun metagenomic sequencing of the milk microbiome

by Min Yap, Conor Feehily, Calum J. Walsh, Mark Fenelon, Eileen F. Murphy, Fionnuala M. McAuliffe, Douwe van Sinderen, Paul W. O’Toole, Orla O’Sullivan, Paul D. Cotter
Published 2020

Fecal Microbiota Transplantation in Gestating Sows and Neonatal Offspring Alters Lifetime Intestinal Microbiota and Growth in Offspring

by Ursula M. McCormack, Tânia Curião, Toby Wilkinson, Barbara U. Metzler-Zebeli, Henry Reyer, Tomas Ryan, Julia A. Calderon-Diaz, Fiona Crispie, Paul D. Cotter, Christopher J. Creevey, Gillian E. Gardiner, Peadar G. Lawlor
Published 2018