HaplotypeTools: a toolkit for accurately identifying recombination and recombinant genotypes

por Rhys A. Farrer
Publicado 2021

Transcriptional Heterogeneity of <italic toggle="yes">Cryptococcus gattii</italic> VGII Compared with Non-VGII Lineages Underpins Key Pathogenicity Pathways

por Rhys A. Farrer, Christopher B. Ford, Johanna Rhodes, Toni Delorey, Robin C. May, Matthew C. Fisher, Elaine Cloutman-Green, Francois Balloux, Christina A. Cuomo
Publicado 2018

Genomic innovations linked to infection strategies across emerging pathogenic chytrid fungi

por Rhys A. Farrer, An Martel, Elin Verbrugghe, Amr Abouelleil, Richard Ducatelle, Joyce E. Longcore, Timothy Y. James, Frank Pasmans, Matthew C. Fisher, Christina A. Cuomo
Publicado 2017

Genomic insights into multidrug-resistance, mating and virulence in Candida auris and related emerging species

por José F. Muñoz, Lalitha Gade, Nancy A. Chow, Vladimir N. Loparev, Phalasy Juieng, Elizabeth L. Berkow, Rhys A. Farrer, Anastasia P. Litvintseva, Christina A. Cuomo
Publicado 2018

Hsf1 and Hsp90 orchestrate temperature-dependent global transcriptional remodelling and chromatin architecture in Candida albicans

por Michelle D. Leach, Rhys A. Farrer, Kaeling Tan, Zhengqiang Miao, Louise A. Walker, Christina A. Cuomo, Robert T. Wheeler, Alistair J. P. Brown, Koon Ho Wong, Leah E. Cowen
Publicado 2016

Genome Evolution and Innovation across the Four Major Lineages of <named-content content-type="genus-species">Cryptococcus gattii</named-content>

por Rhys A. Farrer, Christopher A. Desjardins, Sharadha Sakthikumar, Sharvari Gujja, Sakina Saif, Qiandong Zeng, Yuan Chen, Kerstin Voelz, Joseph Heitman, Robin C. May, Matthew C. Fisher, Christina A. Cuomo
Publicado 2015

Microevolution of Serial Clinical Isolates of <italic toggle="yes">Cryptococcus neoformans</italic> var. <italic toggle="yes">grubii</italic> and <italic toggle="yes">C. gattii</it...

por Yuan Chen, Rhys A. Farrer, Charles Giamberardino, Sharadha Sakthikumar, Alexander Jones, Timothy Yang, Jennifer L. Tenor, Omar Wagih, Marelize Van Wyk, Nelesh P. Govender, Thomas G. Mitchell, Anastasia P. Litvintseva, Christina A. Cuomo, John R. Perfect
Publicado 2017

A New Lineage of <named-content content-type="genus-species">Cryptococcus gattii</named-content> (VGV) Discovered in the Central Zambezian Miombo Woodlands

por Rhys A. Farrer, Miwha Chang, Michael J. Davis, Lucy van Dorp, Dong-Hoon Yang, Terrance Shea, Thomas R. Sewell, Wieland Meyer, Francois Balloux, Hannah M. Edwards, Duncan Chanda, Geoffrey Kwenda, Mathieu Vanhove, Yun C. Chang, Christina A. Cuomo, Matthew C. Fisher, Kyung J. Kwon-Chung
Publicado 2019

Genome Diversity, Recombination, and Virulence across the Major Lineages of <italic toggle="yes">Paracoccidioides</italic>

por José F. Muñoz, Rhys A. Farrer, Christopher A. Desjardins, Juan E. Gallo, Sean Sykes, Sharadha Sakthikumar, Elizabeth Misas, Emily A. Whiston, Eduardo Bagagli, Celia M. A. Soares, Marcus de M. Teixeira, John W. Taylor, Oliver K. Clay, Juan G. McEwen, Christina A. Cuomo
Publicado 2016

Genome analyses of an aggressive and invasive lineage of the Irish potato famine pathogen.

por David E L Cooke, Liliana M Cano, Sylvain Raffaele, Ruairidh A Bain, Louise R Cooke, Graham J Etherington, Kenneth L Deahl, Rhys A Farrer, Eleanor M Gilroy, Erica M Goss, Niklaus J Grünwald, Ingo Hein, Daniel MacLean, James W McNicol, Eva Randall, Ricardo F Oliva, Mathieu A Pel, David S Shaw, Julie N Squires, Moray C Taylor, Vivianne G A A Vleeshouwers, Paul R J Birch, Alison K Lees, Sophien Kamoun
Publicado 2012