Predicting the evolution of sex on complex fitness landscapes.

by Dusan Misevic, Roger D Kouyos, Sebastian Bonhoeffer
Published 2009

The role of recombination for the coevolutionary dynamics of HIV and the immune response.

by Rafal Mostowy, Roger D Kouyos, David Fouchet, Sebastian Bonhoeffer
Published 2011

On being the right size: the impact of population size and stochastic effects on the evolution of drug resistance in hospitals and the community.

by Roger D Kouyos, Pia Abel Zur Wiesch, Sebastian Bonhoeffer
Published 2011

Informed switching strongly decreases the prevalence of antibiotic resistance in hospital wards.

by Roger D Kouyos, Pia Abel Zur Wiesch, Sebastian Bonhoeffer
Published 2011

Author Correction: Efficient microbial colony growth dynamics quantification with ColTapp, an automated image analysis application

by Julian Bär, Mathilde Boumasmoud, Roger D. Kouyos, Annelies S. Zinkernagel, Clément Vulin
Published 2021

Similar impact of CD8+ T cell responses on early virus dynamics during SIV infections of rhesus macaques and sooty mangabeys.

by Roger D Kouyos, Shari N Gordon, Silvija I Staprans, Guido Silvestri, Roland R Regoes
Published 2010

Estimating the fitness cost of escape from HLA presentation in HIV-1 protease and reverse transcriptase.

by Rafal Mostowy, Roger D Kouyos, Ilka Hoof, Trevor Hinkley, Mojgan Haddad, Jeannette M Whitcomb, Christos J Petropoulos, Can Keşmir, Sebastian Bonhoeffer
Published 2012

Quantifying Variation in Bacterial Reproductive Fitness: a High-Throughput Method

by Pascal M. Frey, Julian Baer, Judith Bergada-Pijuan, Conor Lawless, Philipp K. Bühler, Roger D. Kouyos, Katherine P. Lemon, Annelies S. Zinkernagel, Silvio D. Brugger
Published 2021

Assessing predicted HIV-1 replicative capacity in a clinical setting.

by Roger D Kouyos, Viktor von Wyl, Trevor Hinkley, Christos J Petropoulos, Mojgan Haddad, Jeannette M Whitcomb, Jürg Böni, Sabine Yerly, Cristina Cellerai, Thomas Klimkait, Huldrych F Günthard, Sebastian Bonhoeffer, Swiss HIV Cohort Study
Published 2011

Assessing the drivers of syphilis among men who have sex with men in Switzerland reveals a key impact of screening frequency: A modelling study.

by Suraj Balakrishna, Luisa Salazar-Vizcaya, Axel J Schmidt, Viacheslav Kachalov, Katharina Kusejko, Maria Christine Thurnheer, Jan A Roth, Dunja Nicca, Matthias Cavassini, Manuel Battegay, Patrick Schmid, Enos Bernasconi, Huldrych F Günthard, Andri Rauch, Roger D Kouyos, Swiss HIV Cohort Study (SHCS)
Published 2021

Assessing the drivers of syphilis among men who have sex with men in Switzerland reveals a key impact of screening frequency: A modelling study

by Suraj Balakrishna, Luisa Salazar-Vizcaya, Axel J. Schmidt, Viacheslav Kachalov, Katharina Kusejko, Maria Christine Thurnheer, Jan A. Roth, Dunja Nicca, Matthias Cavassini, Manuel Battegay, Patrick Schmid, Enos Bernasconi, Huldrych F. Günthard, Andri Rauch, Roger D. Kouyos, the Swiss HIV Cohort Study (SHCS)
Published 2021

Phylogenetic approach reveals that virus genotype largely determines HIV set-point viral load.

by Samuel Alizon, Viktor von Wyl, Tanja Stadler, Roger D Kouyos, Sabine Yerly, Bernard Hirschel, Jürg Böni, Cyril Shah, Thomas Klimkait, Hansjakob Furrer, Andri Rauch, Pietro L Vernazza, Enos Bernasconi, Manuel Battegay, Philippe Bürgisser, Amalio Telenti, Huldrych F Günthard, Sebastian Bonhoeffer, Swiss HIV Cohort Study
Published 2010

Data linkage to evaluate the long-term risk of HIV infection in individuals seeking post-exposure prophylaxis

by Frédérique Hovaguimian, Huldrych F. Günthard, Christoph Hauser, Anna Conen, Enos Bernasconi, Alexandra Calmy, Matthias Cavassini, Marco Seneghini, Alex Marzel, Henriette Heinrich, Alexandra Scherrer, Julien Riou, Adrian Spoerri, Kurt Schmidlin, Suraj Balakrishna, Dominique L. Braun, Silvana K. Rampini, Jan S. Fehr, Roger D. Kouyos, the Swiss HIV Cohort Study
Published 2021

Distinct conformations of the HIV-1 V3 loop crown are targetable for broad neutralization

by Nikolas Friedrich, Emanuel Stiegeler, Matthias Glögl, Thomas Lemmin, Simon Hansen, Claus Kadelka, Yufan Wu, Patrick Ernst, Liridona Maliqi, Caio Foulkes, Mylène Morin, Mustafa Eroglu, Thomas Liechti, Branislav Ivan, Thomas Reinberg, Jonas V. Schaefer, Umut Karakus, Stephan Ursprung, Axel Mann, Peter Rusert, Roger D. Kouyos, John A. Robinson, Huldrych F. Günthard, Andreas Plückthun, Alexandra Trkola
Published 2021

Heritability of the HIV-1 reservoir size and decay under long-term suppressive ART

by Chenjie Wan, Nadine Bachmann, Venelin Mitov, François Blanquart, Susana Posada Céspedes, Teja Turk, Kathrin Neumann, Niko Beerenwinkel, Jasmina Bogojeska, Jacques Fellay, Volker Roth, Jürg Böni, Matthieu Perreau, Thomas Klimkait, Sabine Yerly, Manuel Battegay, Laura Walti, Alexandra Calmy, Pietro Vernazza, Enos Bernasconi, Matthias Cavassini, Karin J. Metzner, Huldrych F. Günthard, Roger D. Kouyos, the Swiss HIV Cohort Study
Published 2020

Determinants of HIV-1 reservoir size and long-term dynamics during suppressive ART

by Nadine Bachmann, Chantal von Siebenthal, Valentina Vongrad, Teja Turk, Kathrin Neumann, Niko Beerenwinkel, Jasmina Bogojeska, Jaques Fellay, Volker Roth, Yik Lim Kok, Christian W. Thorball, Alessandro Borghesi, Sonali Parbhoo, Mario Wieser, Jürg Böni, Matthieu Perreau, Thomas Klimkait, Sabine Yerly, Manuel Battegay, Andri Rauch, Matthias Hoffmann, Enos Bernasconi, Matthias Cavassini, Roger D. Kouyos, Huldrych F. Günthard, Karin J. Metzner, the Swiss HIV Cohort Study
Published 2019

Multifactorial seroprofiling dissects the contribution of pre-existing human coronaviruses responses to SARS-CoV-2 immunity

by Irene A. Abela, Chloé Pasin, Magdalena Schwarzmüller, Selina Epp, Michèle E. Sickmann, Merle M. Schanz, Peter Rusert, Jacqueline Weber, Stefan Schmutz, Annette Audigé, Liridona Maliqi, Annika Hunziker, Maria C. Hesselman, Cyrille R. Niklaus, Jochen Gottschalk, Eméry Schindler, Alexander Wepf, Urs Karrer, Aline Wolfensberger, Silvana K. Rampini, Patrick M. Meyer Sauteur, Christoph Berger, Michael Huber, Jürg Böni, Dominique L. Braun, Maddalena Marconato, Markus G. Manz, Beat M. Frey, Huldrych F. Günthard, Roger D. Kouyos, Alexandra Trkola
Published 2021