Graph embedding and unsupervised learning predict genomic sub-compartments from HiC chromatin interaction data

por Haitham Ashoor, Xiaowen Chen, Wojciech Rosikiewicz, Jiahui Wang, Albert Cheng, Ping Wang, Yijun Ruan, Sheng Li
Publicado 2020

A supervised learning framework for chromatin loop detection in genome-wide contact maps

por Tarik J. Salameh, Xiaotao Wang, Fan Song, Bo Zhang, Sage M. Wright, Chachrit Khunsriraksakul, Yijun Ruan, Feng Yue
Publicado 2020

Broad surveys of DNA viral diversity obtained through viral metagenomics of mosquitoes.

por Terry Fei Fan Ng, Dana L Willner, Yan Wei Lim, Robert Schmieder, Betty Chau, Christina Nilsson, Simon Anthony, Yijun Ruan, Forest Rohwer, Mya Breitbart
Publicado 2011

Ultrastructural visualization of 3D chromatin folding using volume electron microscopy and DNA in situ hybridization

por Paweł Trzaskoma, Błażej Ruszczycki, Byoungkoo Lee, Katarzyna K. Pels, Katarzyna Krawczyk, Grzegorz Bokota, Andrzej A. Szczepankiewicz, Jesse Aaron, Agnieszka Walczak, Małgorzata A. Śliwińska, Adriana Magalska, Michal Kadlof, Artur Wolny, Zofia Parteka, Sebastian Arabasz, Magdalena Kiss-Arabasz, Dariusz Plewczyński, Yijun Ruan, Grzegorz M. Wilczyński
Publicado 2020

A genomic survey of positive selection in Burkholderia pseudomallei provides insights into the evolution of accidental virulence.

por Tannistha Nandi, Catherine Ong, Arvind Pratap Singh, Justin Boddey, Timothy Atkins, Mitali Sarkar-Tyson, Angela E Essex-Lopresti, Hui Hoon Chua, Talima Pearson, Jason F Kreisberg, Christina Nilsson, Pramila Ariyaratne, Catherine Ronning, Liliana Losada, Yijun Ruan, Wing-Kin Sung, Donald Woods, Richard W Titball, Ifor Beacham, Ian Peak, Paul Keim, William C Nierman, Patrick Tan
Publicado 2010