Analysis of the relationship between genomic GC Content and patterns of base usage, codon usage and amino acid usage in prokaryotes: similar GC content adopts similar compositional frequencies regardless of the phylogenetic lineages.
The GC contents of 2670 prokaryotic genomes that belong to diverse phylogenetic lineages were analyzed in this paper. These genomes had GC contents that ranged from 13.5% to 74.9%. We analyzed the distance of base frequencies at the three codon positions, codon frequencies, and amino acid compositio...
Saved in:
Main Authors: | Hui-Qi Zhou, Lu-Wen Ning, Hui-Xiong Zhang, Feng-Biao Guo |
---|---|
Format: | article |
Language: | EN |
Published: |
Public Library of Science (PLoS)
2014
|
Subjects: | |
Online Access: | https://doaj.org/article/05396f65b7bf40a097c2de99f5c33be5 |
Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
-
Phylogenetic and codon usage analysis of atypical porcine pestivirus (APPV)
by: Shuonan Pan, et al.
Published: (2020) -
Codon Usage Bias in Autophagy-Related Gene 13 in Eukaryotes: Uncovering the Genetic Divergence by the Interplay Between Nucleotides and Codon Usages
by: Yicong Li, et al.
Published: (2021) -
Analysis of codon usage bias reveals optimal codons in Elaeis guineensis
by: Redi Aditama, et al.
Published: (2020) -
Codon Usage Optimization in the Prokaryotic Tree of Life: How Synonymous Codons Are Differentially Selected in Sequence Domains with Different Expression Levels and Degrees of Conservation
by: José Luis López, et al.
Published: (2020) -
Codon Usage Heterogeneity in the Multipartite Prokaryote Genome: Selection-Based Coding Bias Associated with Gene Location, Expression Level, and Ancestry
by: J. L. López, et al.
Published: (2019)