The Genomic and Transcriptomic Analyses of Floccularia luteovirens, a Rare Edible Fungus in the Qinghai–Tibet Plateau, Provide Insights into the Taxonomy Placement and Fruiting Body Formation

Floccularia luteovirens is a famous and precious edible mushroom (Huang Mogu) on the Qinghai–Tibet plateau that has a unique flavor and remarkable medical functions. Herein, we report a reference-grade 27 Mb genome of F. luteovirens containing 7068 protein-codin...

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Autores principales:	Zhengjie Liu, Hongyun Lu, Xinglin Zhang, Qihe Chen
Formato:	article
Lenguaje:	EN
Publicado:	MDPI AG 2021
Materias:	biosynthesis gene clusters (BGCs) <i>Floccularia luteovirens</i> fruiting body formation genome phylogeny Biology (General) QH301-705.5
Acceso en línea:	https://doaj.org/article/0bc7e18e29094d80985fe88ce94f1013
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spelling	oai:doaj.org-article:0bc7e18e29094d80985fe88ce94f10132021-11-25T18:05:27ZThe Genomic and Transcriptomic Analyses of <i>Floccularia luteovirens</i>, a Rare Edible Fungus in the Qinghai–Tibet Plateau, Provide Insights into the Taxonomy Placement and Fruiting Body Formation10.3390/jof71108872309-608Xhttps://doaj.org/article/0bc7e18e29094d80985fe88ce94f10132021-10-01T00:00:00Zhttps://www.mdpi.com/2309-608X/7/11/887https://doaj.org/toc/2309-608X<i>Floccularia luteovirens</i> is a famous and precious edible mushroom (Huang Mogu) on the Qinghai–Tibet plateau that has a unique flavor and remarkable medical functions. Herein, we report a reference-grade 27 Mb genome of <i>F. luteovirens</i> containing 7068 protein-coding genes. The genome component and gene functions were predicted. Genome ontology enrichment and pathway analyses indicated the potential production capacity for terpenoids, polyketides and polysaccharides. Moreover, 16 putative gene clusters and 145 genes coding for secondary metabolites were obtained, including guadinomine and melleolides. In addition, phylogenetic and comparative genomic analyses shed light on the precise classification of <i>F. luteovirens</i> suggesting that it belongs to the genus <i>Floccularia</i> instead of <i>Armillaria</i>. RNA-sequencing and comparative transcriptomic analysis revealed differentially expressed genes during four developmental stages of <i>F. luteovirens</i>, that of which helps to identify important genes regulating fruiting body formation for strain modification. This study will provide insight into artificial cultivation and increase the production of useful metabolites.Zhengjie LiuHongyun LuXinglin ZhangQihe ChenMDPI AGarticlebiosynthesis gene clusters (BGCs)<i>Floccularia luteovirens</i>fruiting body formationgenomephylogenyBiology (General)QH301-705.5ENJournal of Fungi, Vol 7, Iss 887, p 887 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	biosynthesis gene clusters (BGCs) <i>Floccularia luteovirens</i> fruiting body formation genome phylogeny Biology (General) QH301-705.5
spellingShingle	biosynthesis gene clusters (BGCs) <i>Floccularia luteovirens</i> fruiting body formation genome phylogeny Biology (General) QH301-705.5 Zhengjie Liu Hongyun Lu Xinglin Zhang Qihe Chen The Genomic and Transcriptomic Analyses of <i>Floccularia luteovirens</i>, a Rare Edible Fungus in the Qinghai–Tibet Plateau, Provide Insights into the Taxonomy Placement and Fruiting Body Formation
description	<i>Floccularia luteovirens</i> is a famous and precious edible mushroom (Huang Mogu) on the Qinghai–Tibet plateau that has a unique flavor and remarkable medical functions. Herein, we report a reference-grade 27 Mb genome of <i>F. luteovirens</i> containing 7068 protein-coding genes. The genome component and gene functions were predicted. Genome ontology enrichment and pathway analyses indicated the potential production capacity for terpenoids, polyketides and polysaccharides. Moreover, 16 putative gene clusters and 145 genes coding for secondary metabolites were obtained, including guadinomine and melleolides. In addition, phylogenetic and comparative genomic analyses shed light on the precise classification of <i>F. luteovirens</i> suggesting that it belongs to the genus <i>Floccularia</i> instead of <i>Armillaria</i>. RNA-sequencing and comparative transcriptomic analysis revealed differentially expressed genes during four developmental stages of <i>F. luteovirens</i>, that of which helps to identify important genes regulating fruiting body formation for strain modification. This study will provide insight into artificial cultivation and increase the production of useful metabolites.
format	article
author	Zhengjie Liu Hongyun Lu Xinglin Zhang Qihe Chen
author_facet	Zhengjie Liu Hongyun Lu Xinglin Zhang Qihe Chen
author_sort	Zhengjie Liu
title	The Genomic and Transcriptomic Analyses of <i>Floccularia luteovirens</i>, a Rare Edible Fungus in the Qinghai–Tibet Plateau, Provide Insights into the Taxonomy Placement and Fruiting Body Formation
title_short	The Genomic and Transcriptomic Analyses of <i>Floccularia luteovirens</i>, a Rare Edible Fungus in the Qinghai–Tibet Plateau, Provide Insights into the Taxonomy Placement and Fruiting Body Formation
title_full	The Genomic and Transcriptomic Analyses of <i>Floccularia luteovirens</i>, a Rare Edible Fungus in the Qinghai–Tibet Plateau, Provide Insights into the Taxonomy Placement and Fruiting Body Formation
title_fullStr	The Genomic and Transcriptomic Analyses of <i>Floccularia luteovirens</i>, a Rare Edible Fungus in the Qinghai–Tibet Plateau, Provide Insights into the Taxonomy Placement and Fruiting Body Formation
title_full_unstemmed	The Genomic and Transcriptomic Analyses of <i>Floccularia luteovirens</i>, a Rare Edible Fungus in the Qinghai–Tibet Plateau, Provide Insights into the Taxonomy Placement and Fruiting Body Formation
title_sort	genomic and transcriptomic analyses of <i>floccularia luteovirens</i>, a rare edible fungus in the qinghai–tibet plateau, provide insights into the taxonomy placement and fruiting body formation
publisher	MDPI AG
publishDate	2021
url	https://doaj.org/article/0bc7e18e29094d80985fe88ce94f1013
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The Genomic and Transcriptomic Analyses of <i>Floccularia luteovirens</i>, a Rare Edible Fungus in the Qinghai–Tibet Plateau, Provide Insights into the Taxonomy Placement and Fruiting Body Formation

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