The Identification of a Tumor Infiltration CD8+ T-Cell Gene Signature That Can Potentially Improve the Prognosis and Prediction of Immunization Responses in Papillary Renal Cell Carcinoma
BackgroundCD8+ T cells, vital effectors pertaining to adaptive immunity, display close relationships to the immunization responses to kill tumor cells. Understanding the effect exerted by tumor infiltration CD8+ T cells in papillary renal cell carcinoma (papRCC) is critical for assessing the prognos...
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Frontiers Media S.A.
2021
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oai:doaj.org-article:17deac4244264fb9afa61778d01ea6d12021-11-10T06:49:51ZThe Identification of a Tumor Infiltration CD8+ T-Cell Gene Signature That Can Potentially Improve the Prognosis and Prediction of Immunization Responses in Papillary Renal Cell Carcinoma2234-943X10.3389/fonc.2021.757641https://doaj.org/article/17deac4244264fb9afa61778d01ea6d12021-11-01T00:00:00Zhttps://www.frontiersin.org/articles/10.3389/fonc.2021.757641/fullhttps://doaj.org/toc/2234-943XBackgroundCD8+ T cells, vital effectors pertaining to adaptive immunity, display close relationships to the immunization responses to kill tumor cells. Understanding the effect exerted by tumor infiltration CD8+ T cells in papillary renal cell carcinoma (papRCC) is critical for assessing the prognosis process and responses to immunization therapy in cases with this disease.Materials and ApproachesThe single-cell transcriptome data of papRCC were used for screening CD8+ T-cell-correlated differentially expressed genes to achieve the following investigations. On that basis, a prognosis gene signature associated with tumor infiltration CD8+ T cell was built and verified with The Cancer Genome Atlas data set. Risk scores were determined for papRCC cases and categorized as high- or low-risk groups. The prognosis significance for risk scores was assessed with multiple-variate Cox investigation and Kaplan–Meier survival curves. In addition, the possible capability exhibited by the genetic profiles of cases to assess the response to immunization therapy was further explored.ResultsSix hundred twenty-one cell death-inhibiting RNA genes were screened using single-cell RNA sequencing. A gene signature consisting of seven genes (LYAR, YBX1, PNRC1, TCF25, MYL12B, MINOS1, and LINC01420) was then identified, and this collective was considered to be an independent prognosis indicator that could strongly assess overall survival in papRCC. In addition, the data allowed papRCC cases to fall to cohorts at high and low risks, exhibiting a wide range of clinically related features as well as different CD8+ T-cell immunization infiltration and immunization therapy responses.ConclusionsOur work provides a possible explanation for the limited response of current immunization checkpoint-inhibiting elements for combating papRCC. Furthermore, the researchers built a novel genetic signature that was able to assess the prognosis and immunotherapeutic response of cases. This may also be considered as a promising therapeutic target for the disease.Jie WangJie WangMeiying HuangMeiying HuangPeng HuangJingjie ZhaoJunhua TanFeifan HuangRuiying MaYu XiaoGao DengLiuzhi WeiLiuzhi WeiQiuju WeiQiuju WeiZechen WangSiyuan HeJiajia ShenSuren SoorannaLingzhang MengJian SongJian SongFrontiers Media S.A.articletumor infiltration immune cellsprognostic modelpapillary renal cell carcinomaCD8+ T cellscRNA-seqNeoplasms. Tumors. Oncology. Including cancer and carcinogensRC254-282ENFrontiers in Oncology, Vol 11 (2021) |
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| collection |
DOAJ |
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| topic |
tumor infiltration immune cells prognostic model papillary renal cell carcinoma CD8+ T cell scRNA-seq Neoplasms. Tumors. Oncology. Including cancer and carcinogens RC254-282 |
| spellingShingle |
tumor infiltration immune cells prognostic model papillary renal cell carcinoma CD8+ T cell scRNA-seq Neoplasms. Tumors. Oncology. Including cancer and carcinogens RC254-282 Jie Wang Jie Wang Meiying Huang Meiying Huang Peng Huang Jingjie Zhao Junhua Tan Feifan Huang Ruiying Ma Yu Xiao Gao Deng Liuzhi Wei Liuzhi Wei Qiuju Wei Qiuju Wei Zechen Wang Siyuan He Jiajia Shen Suren Sooranna Lingzhang Meng Jian Song Jian Song The Identification of a Tumor Infiltration CD8+ T-Cell Gene Signature That Can Potentially Improve the Prognosis and Prediction of Immunization Responses in Papillary Renal Cell Carcinoma |
| description |
BackgroundCD8+ T cells, vital effectors pertaining to adaptive immunity, display close relationships to the immunization responses to kill tumor cells. Understanding the effect exerted by tumor infiltration CD8+ T cells in papillary renal cell carcinoma (papRCC) is critical for assessing the prognosis process and responses to immunization therapy in cases with this disease.Materials and ApproachesThe single-cell transcriptome data of papRCC were used for screening CD8+ T-cell-correlated differentially expressed genes to achieve the following investigations. On that basis, a prognosis gene signature associated with tumor infiltration CD8+ T cell was built and verified with The Cancer Genome Atlas data set. Risk scores were determined for papRCC cases and categorized as high- or low-risk groups. The prognosis significance for risk scores was assessed with multiple-variate Cox investigation and Kaplan–Meier survival curves. In addition, the possible capability exhibited by the genetic profiles of cases to assess the response to immunization therapy was further explored.ResultsSix hundred twenty-one cell death-inhibiting RNA genes were screened using single-cell RNA sequencing. A gene signature consisting of seven genes (LYAR, YBX1, PNRC1, TCF25, MYL12B, MINOS1, and LINC01420) was then identified, and this collective was considered to be an independent prognosis indicator that could strongly assess overall survival in papRCC. In addition, the data allowed papRCC cases to fall to cohorts at high and low risks, exhibiting a wide range of clinically related features as well as different CD8+ T-cell immunization infiltration and immunization therapy responses.ConclusionsOur work provides a possible explanation for the limited response of current immunization checkpoint-inhibiting elements for combating papRCC. Furthermore, the researchers built a novel genetic signature that was able to assess the prognosis and immunotherapeutic response of cases. This may also be considered as a promising therapeutic target for the disease. |
| format |
article |
| author |
Jie Wang Jie Wang Meiying Huang Meiying Huang Peng Huang Jingjie Zhao Junhua Tan Feifan Huang Ruiying Ma Yu Xiao Gao Deng Liuzhi Wei Liuzhi Wei Qiuju Wei Qiuju Wei Zechen Wang Siyuan He Jiajia Shen Suren Sooranna Lingzhang Meng Jian Song Jian Song |
| author_facet |
Jie Wang Jie Wang Meiying Huang Meiying Huang Peng Huang Jingjie Zhao Junhua Tan Feifan Huang Ruiying Ma Yu Xiao Gao Deng Liuzhi Wei Liuzhi Wei Qiuju Wei Qiuju Wei Zechen Wang Siyuan He Jiajia Shen Suren Sooranna Lingzhang Meng Jian Song Jian Song |
| author_sort |
Jie Wang |
| title |
The Identification of a Tumor Infiltration CD8+ T-Cell Gene Signature That Can Potentially Improve the Prognosis and Prediction of Immunization Responses in Papillary Renal Cell Carcinoma |
| title_short |
The Identification of a Tumor Infiltration CD8+ T-Cell Gene Signature That Can Potentially Improve the Prognosis and Prediction of Immunization Responses in Papillary Renal Cell Carcinoma |
| title_full |
The Identification of a Tumor Infiltration CD8+ T-Cell Gene Signature That Can Potentially Improve the Prognosis and Prediction of Immunization Responses in Papillary Renal Cell Carcinoma |
| title_fullStr |
The Identification of a Tumor Infiltration CD8+ T-Cell Gene Signature That Can Potentially Improve the Prognosis and Prediction of Immunization Responses in Papillary Renal Cell Carcinoma |
| title_full_unstemmed |
The Identification of a Tumor Infiltration CD8+ T-Cell Gene Signature That Can Potentially Improve the Prognosis and Prediction of Immunization Responses in Papillary Renal Cell Carcinoma |
| title_sort |
identification of a tumor infiltration cd8+ t-cell gene signature that can potentially improve the prognosis and prediction of immunization responses in papillary renal cell carcinoma |
| publisher |
Frontiers Media S.A. |
| publishDate |
2021 |
| url |
https://doaj.org/article/17deac4244264fb9afa61778d01ea6d1 |
| work_keys_str_mv |
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