A bioinformatics pipeline for Mycobacterium tuberculosis sequencing that cleans contaminant reads from sputum samples.

Next-Generation Sequencing (NGS) is widely used to investigate genomic variation. In several studies, the genetic variation of Mycobacterium tuberculosis has been analyzed in sputum samples without previous culture, using target enrichment methodologies for NGS. Alignments obtained by different prog...

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Main Authors:	Betzaida Cuevas-Córdoba, Cristóbal Fresno, Joshua I Haase-Hernández, Martín Barbosa-Amezcua, Minerva Mata-Rocha, Marcela Muñoz-Torrico, Miguel A Salazar-Lezama, José A Martínez-Orozco, Luis A Narváez-Díaz, Jorge Salas-Hernández, Vanessa González-Covarrubias, Xavier Soberón
Format:	article
Language:	EN
Published:	Public Library of Science (PLoS) 2021
Subjects:	Medicine R Science Q
Online Access:	https://doaj.org/article/58c77dddaa5d4c8f8ebd9ce5e5133ef0
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A bioinformatics pipeline for Mycobacterium tuberculosis sequencing that cleans contaminant reads from sputum samples

by Betzaida Cuevas-Córdoba, Cristóbal Fresno, Joshua I. Haase-Hernández, Martín Barbosa-Amezcua, Minerva Mata-Rocha, Marcela Muñoz-Torrico, Miguel A. Salazar-Lezama, José A. Martínez-Orozco, Luis A. Narváez-Díaz, Jorge Salas-Hernández, Vanessa González-Covarrubias, Xavier Soberón
Published 2021

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A bioinformatics pipeline for Mycobacterium tuberculosis sequencing that cleans contaminant reads from sputum samples.

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